Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 142 / 1e-35 Ankyrin repeat family protein (.1) AT5G35810 128 / 3e-32 Ankyrin repeat family protein (.1) AT5G04690 125 / 6e-30 Ankyrin repeat family protein (.1) AT5G04700 124 / 2e-29 Ankyrin repeat family protein (.1) AT3G54070 122 / 4e-29 Ankyrin repeat family protein (.1) AT5G04730 115 / 1e-26 Ankyrin-repeat containing protein (.1) AT5G04680 100 / 2e-21 Ankyrin repeat family protein (.1) AT4G03480 64 / 2e-10 Ankyrin repeat family protein (.1) AT4G03450 61 / 3e-09 Ankyrin repeat family protein (.1) AT3G09550 59 / 1e-08 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118600 [exp] 508 / 2e-172 AT3G18670 160 / 8e-42 Ankyrin repeat family protein (.1) Potri.015G119401 [exp] 353 / 5e-110 AT5G04690 120 / 7e-28 Ankyrin repeat family protein (.1) Potri.014G057950 [exp] 285 / 2e-86 AT3G18670 176 / 2e-47 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 281 / 2e-84 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G019600 [exp] 249 / 7e-77 AT3G18670 137 / 4e-36 Ankyrin repeat family protein (.1) Potri.011G019200 [exp] 254 / 4e-74 AT3G18670 137 / 1e-33 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 250 / 1e-72 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 248 / 1e-72 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.006G281500 [exp] 244 / 2e-70 AT3G54070 110 / 8e-25 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038357 [exp] 156 / 1e-39 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10014701 [exp] 155 / 1e-39 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 151 / 6e-38 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10000489 [exp] 148 / 8e-38 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10027721 [exp] 147 / 5e-37 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10014030 [exp] 134 / 2e-32 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10016672 [exp] 134 / 2e-32 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10019887 [exp] 125 / 1e-29 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10035567 [exp] 116 / 2e-27 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 76 / 3e-16 ND 146 / 2e-42
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.015G119800.5 pacid=42775206 polypeptide=Potri.015G119800.5.p locus=Potri.015G119800 ID=Potri.015G119800.5.v4.1 annot-version=v4.1 ATGGGGACATATATAACTGTAGCGAAGGTTGTCTACCTAGCAGCCTTGGAAGAAGACTGGGATAGGATGATTCATGCTTGCAGTGGCATCAGTAATATCT ACGTGATGTCTCCAGTAACGGTTTCGGAAGATACTCCATTGCACCTGGCAGTGTATAGCAAAAAGGTTGAGCCGCTTCAAACTCTACTCGATATTGCCAA AAAAAATTCAATGCTCGGGAATCCCTATACAAAAAAGAACGCGTATGGAAATACAGTTCTTCATGAAGCAGTTTTTGCTGGAAATATGGAAGCAGTACAG CACTTACTCAAGTTTACCCCTAAAGAACAGGGTGAATTTCATCCTTCAATGCAACTTCAGACTAAAAACGCGCTTGGGGAGACTCCATTGTATAGAGCTG CTGCATGTGGTAAGAAAGAAATAGTGGAGTATTTAGCTGGACAAACGGGCCAAATCTCAGAGGGAAAGCTATCAGAGGATCACCGCAAGAGAGAAGATTC AAAGCCGATTCTTCATGCTGCCATCCAAGGACAACACTTTGACACTGCTCTGACGTTGCTGAACCTGGATCCATCACTTTATGAAATGAAGGACGATCAG GGAATGACCTGTCTTCATGTCCTTGCTGGGATGCCTAGTGCTTTCAAGAGTGGATATGCACTGCGCCCAATTACCGTTACGAACTTGTTCTACCGTTGCC TTTCCGCTGCAAAGGGTGATGGCGACCAGAGCCGGAGTAAAAAAGGATGGCCAGTGGTGGAAAGAATCCGGAAAGAAAAGCGCAAGCATGAATCTGCATT GGAACTTGCCAAGGAGCTTATCAAAAAGAACCAGCGTAAATGGTGGCAATCTATCAAAGTGAAGCCTACCAAAGTTAATATCGAGACCCCTGGTCAAGCA GGAAGAGGAGGACAAAGTGAAAGACAAGGAGGGGGAGGAAACCCAGGAGGAAGAGGAAACCCAGGAGGAGGAGGCGAAGGACAAGAGGGAGCAAGAGAAG GAGTGGACACTGGAAAAGGAGGGGGAGGTGGAGAGGTGGAAAATAATGAAAATGTTCAACCCATGATAGAAGAAAATAGAAGACAAGAGAGGCCTCCTTC GCCTCCAAACCCGCTGTTTATAGCAACTAGTAATGGAATAGTAGAGATTGCTGAAGAGATACTTGATAAATTTCCTCAGGCTATTGAGCTTGTTAATGTT AAGGGGCAGAACATATTGCACTTGGCCGTGATGCATCGACAGCGGGAGATTTTCCGTCTTGTGAGGAAAAAGAACTTACTAGTGACCAGGATGAGTTCGA GCGTAGATAATAATGGCTTCACATTGTTGCACCAAGTTGCACACGTGAAGCACTACAGCGGAGGAGCCAAGCCCGGCCCTGCTCTCCAGCTACAAGAAGA AATAAAATGGTTCAAGCGAGTGCAGAGGGTGGTTCCACCTTCTCTGGCCGAGAAGCGGGTACTGTGGGTGGTTCCGAATGACAAGAATTACAACTTCACT GCATTCGAGCTCTTCCAAGAGGAGCATAAAGGTCAACTCAAGTTGGCGCAAGATTGGATCGAGAAAACCTCTCAGTCATGCTCAGCAGTAGCCGTTCTTT TGGCCACCGTTGTCTTTGCTGCCGCTTACACTATACCTGGAGGTTCTGACGATCGTGGCTTTCCCATTTTCCTTCACGACCGTTTCTTCATAGCTTTCAC TGTCTTGGATGTTACCGCCTTGGCGAGCTCCCTGACCTCAGTTGTGATGTTCCTTTCTATCCTCACCACTCCTTTCGAATGCGAGAAATTCTATCACAAT ATTCCTCGGAAACTGATACTGGGCTTTACTTTGCTCTTCTTCTCAGTGATGACAACCATGCTTGCTTTTTCATGCACTTCTTTTAGTCGTTCGCTTGAAG AAGTCATGGACCAGAGGTCTGATGTCCATGGCTGCTTTCCTTCCCGTGTCAGTATTTGCAGTAATGCAGTTCCCTTTATATGTCGCATTTATGACTACTA TGAAGGACTTCTATAA
AA sequence Show only first row Show all	>Potri.015G119800.5 pacid=42775206 polypeptide=Potri.015G119800.5.p locus=Potri.015G119800 ID=Potri.015G119800.5.v4.1 annot-version=v4.1 MGTYITVAKVVYLAALEEDWDRMIHACSGISNIYVMSPVTVSEDTPLHLAVYSKKVEPLQTLLDIAKKNSMLGNPYTKKNAYGNTVLHEAVFAGNMEAVQ HLLKFTPKEQGEFHPSMQLQTKNALGETPLYRAAACGKKEIVEYLAGQTGQISEGKLSEDHRKREDSKPILHAAIQGQHFDTALTLLNLDPSLYEMKDDQ GMTCLHVLAGMPSAFKSGYALRPITVTNLFYRCLSAAKGDGDQSRSKKGWPVVERIRKEKRKHESALELAKELIKKNQRKWWQSIKVKPTKVNIETPGQA GRGGQSERQGGGGNPGGRGNPGGGGEGQEGAREGVDTGKGGGGGEVENNENVQPMIEENRRQERPPSPPNPLFIATSNGIVEIAEEILDKFPQAIELVNV KGQNILHLAVMHRQREIFRLVRKKNLLVTRMSSSVDNNGFTLLHQVAHVKHYSGGAKPGPALQLQEEIKWFKRVQRVVPPSLAEKRVLWVVPNDKNYNFT AFELFQEEHKGQLKLAQDWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSDDRGFPIFLHDRFFIAFTVLDVTALASSLTSVVMFLSILTTPFECEKFYHN IPRKLILGFTLLFFSVMTTMLAFSCTSFSRSLEEVMDQRSDVHGCFPSRVSICSNAVPFICRIYDYYEGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	0	1
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	1.00	0.9548
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	2.00	0.9209
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G111200 [exp]	4.24	0.8923
AT4G31980			unknown protein		Potri.003G208750 [exp]	4.24	0.9125
AT5G06740			Concanavalin A-like lectin pro...		Potri.011G146500 [exp]	5.19	0.8873
AT4G31980			unknown protein		Potri.003G208700 [exp]	6.00	0.9083
AT4G31980			unknown protein		Potri.003G208600 [exp]	6.24	0.8796
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.017G137600 [exp]	6.63	0.8836
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.007G007900 [exp]	11.83	0.8917
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011200 [exp]	12.00	0.8580

Compare expression of checked genes

Potri.015G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.