Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24560 88 / 4e-21 ATPP2-B12 phloem protein 2-B12 (.1) AT1G80110 82 / 9e-19 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02240 81 / 4e-18 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G33920 78 / 5e-18 ATPP2-A4 phloem protein 2-A4 (.1) AT4G19840 79 / 1e-17 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT2G02360 77 / 9e-17 ATPP2-B10 phloem protein 2-B10 (.1) AT1G65390 75 / 9e-16 ATPP2-A5 phloem protein 2 A5 (.1.2) AT2G02250 72 / 6e-15 ATPP2-B2 phloem protein 2-B2 (.1) AT4G19850 65 / 7e-13 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT1G09155 66 / 8e-13 ATPP2-B15 phloem protein 2-B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120400 [exp] 85 / 9e-20 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.006G267000 [exp] 85 / 2e-19 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 80 / 8e-18 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 80 / 1e-17 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 78 / 5e-17 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 71 / 2e-14 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.013G012600 [exp] 68 / 2e-13 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 67 / 4e-13 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 65 / 2e-12 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018303 [exp] 208 / 2e-68 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040603 [exp] 206 / 8e-68 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10040606 [exp] 205 / 2e-67 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10018301 [exp] 205 / 3e-67 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10042713 [exp] 84 / 4e-19 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 82 / 1e-18 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10040602 [exp] 80 / 2e-17 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10018304 [exp] 79 / 4e-17 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10020674 [exp] 70 / 3e-14 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 69 / 8e-14 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.015G120300.2 pacid=42776093 polypeptide=Potri.015G120300.2.p locus=Potri.015G120300 ID=Potri.015G120300.2.v4.1 annot-version=v4.1 ATGAATCCCTTTAACACTACATTTATGTTCAGTTTTGCAGTGCGTAGAACTTTGAACTACGATATGGATTACGACCAAAGATCAGAGGCTCTCTCTGGCC CTCACTGGAAGGGTGATGGCTCTTCAATATCGTCAGATAAAGCATGTCCTGCAACATGCAGAGTGCCAGCCAAGGCTCTAAATATTATATGGGGCAATGA TCCCCGGTTTTGGCAATGGATCAAACTTTCAGAAGTGGAAACAAGGTCAGTTGGTTTCGACGAAGGTGCAAGGCTCCTTCAAGTTAACTGGATTGAGGTC ACTGGGAAATTGCCTTCAACTATGTTCAATGTTGCTTCAGCTACAAAATACGGAGTATATTATGTCATGAAATTTCAGGTTGATGCATTTGGTTGGCATT CTGTTCCAATCAAGTTCAAGGTAAGACTCAATGGACAAGAGACGGTGAAAAACTTTGTACTTGAGTCTTACAAGGAGAAACATGATGTGTGGCATGAGAT TTGCGGTGGCGAATTCACAGTTTCAAAGAACGCAGCTGGAGTTGTAGAATTTGGTATGTTTGAAGTTAAAAGCGAGTGGTGGAAGGGTGGCGTGGTTCTT GCAGGTATCAAGATTAAGCCAAAAGAAGGTTAA
AA sequence Show only first row Show all	>Potri.015G120300.2 pacid=42776093 polypeptide=Potri.015G120300.2.p locus=Potri.015G120300 ID=Potri.015G120300.2.v4.1 annot-version=v4.1 MNPFNTTFMFSFAVRRTLNYDMDYDQRSEALSGPHWKGDGSSISSDKACPATCRVPAKALNIIWGNDPRFWQWIKLSEVETRSVGFDEGARLLQVNWIEV TGKLPSTMFNVASATKYGVYYVMKFQVDAFGWHSVPIKFKVRLNGQETVKNFVLESYKEKHDVWHEICGGEFTVSKNAAGVVEFGMFEVKSEWWKGGVVL AGIKIKPKEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Potri.015G120300 [exp]	0	1
AT3G27030			unknown protein		Potri.015G098200 [exp]	5.00	0.9294
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	6.48	0.9525
AT1G68390			Core-2/I-branching beta-1,6-N-...		Potri.015G045400 [exp]	7.48	0.9031
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	10.19	0.9511
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	10.95	0.9509
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.001G172700 [exp]	13.26	0.9366
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.015G030200 [exp]	13.71	0.9484	NAC017
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050600 [exp]	13.78	0.9482
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	19.62	0.9447
AT1G63310			unknown protein		Potri.011G149100 [exp]	19.74	0.9458

Compare expression of checked genes

Potri.015G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.