Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31190 541 / 0 IMPL1 myo-inositol monophosphatase like 1 (.1) AT3G02870 118 / 9e-31 VTC4 Inositol monophosphatase family protein (.1.2.3) AT4G39120 78 / 1e-15 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT5G09290 53 / 1e-07 Inositol monophosphatase family protein (.1) AT5G54390 45 / 6e-05 ATAHL, AHL HAL2-like (.1) AT4G05090 43 / 0.0002 Inositol monophosphatase family protein (.1) AT5G64000 42 / 0.0004 ATSAL2, SAL2 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120492 [exp] 676 / 0 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.010G156300 [exp] 127 / 5e-34 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.016G011000 [exp] 127 / 6e-34 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 126 / 1e-33 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 120 / 2e-31 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.009G120600 [exp] 70 / 3e-13 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.005G063900 [exp] 46 / 2e-05 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.007G105100 [exp] 46 / 3e-05 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018305 [exp] 577 / 0 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10040601 [exp] 478 / 7e-170 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10027343 [exp] 124 / 2e-32 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10039046 [exp] 104 / 6e-25 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10041968 [exp] 72 / 7e-14 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 64 / 3e-11 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10037677 [exp] 42 / 0.0004 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10006739 [exp] 42 / 0.0006 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00459 [poplar] [flax] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Potri.015G120400.6 pacid=42775956 polypeptide=Potri.015G120400.6.p locus=Potri.015G120400 ID=Potri.015G120400.6.v4.1 annot-version=v4.1 ATGAACTCCATTATTGGCATTGAAATGAGCAGGTCCCTAGTGTTTTCCACAAACATTCCCCTTAAGTTTTCCCAAAAACCCATATCATTTTCTCTCTTTA ATCACTCAAAACTTTGTGTTCCACAAAGATTTAGTGAGAATTCTCAATGTGGGCTTCAAAGATTTCAGCTTTTGAGCATGAAACTAGCAAGAAATGTGTG TACAAAGGCTGCTTTATCAGAGATGAAGTATCCTAGAGTGGCTGCGTCATCAACTGGGCCTATACCTCCCAGTCAGCTTATTCAAGTTGTTGAGACTGCT GCTAAGACTGGTGCTGAGGTAGTGATGGATGCTGTTAATAAGCCTCGAAATATCACATATAAAGGACTTACAGATTTGGTGACCGACACAGACAAAATGA GCGAGGCTGCTATCTTAGAAGTTGGTAGAAGGAATTTTGGAGATCACCTCATTCTTGGGGAGGAGGGAGGAATCATAGGAGATACATTATCTGATTATCT ATGGTGCATTGATCCTCTAGATGGAACAACAAATTTTGCTCATGGTTATCCTAGCTTTGCGGTTTCTGTGGGAGTTCTTTTTCAAGGAAATCCTGCGGCT GCTTCGGTGGTGGAGTTTGTTGGTGGTCCTATGGCTTGGAACACACGCACATTTTCTGCAACTGCCGGTGGAGGAGCATTTTGTAATGGCCAAAAAATTC ACGCAAGTCCAACTGCTCAGGTTGAGCAGTCTCTTCTTGTGACTGGTTTTGGATATGAACATGATGATCCATGGGCCACTAACATTGAACTATTCAAGGA GTTTACTGATGTCAGCAGGGGTGTTCGAAGGCTTGGTGCTGCTGCTGTTGACATGTGTCATGTGGCTCTTGGGATTGTAGAAGCATATTGGGAATATCGT CTTAAGCCATGGGATATGGCTGCTGGTGTTCTGATAGTTGAAGAGGCTGGGGGGACAGTATCTCGCATGGATGGTGGAAAGTTTTGTGTATTTGATAGAT CTGTTTTGGTGTCTAATGGTGTGTTGCATGCCAAGCTTTTGGAGAGGATTGCACCTGCCACTGAGAAACTGAAAAGCAAAGGAATTGATTTCTCATTGTG GTATAAGCCAGAAAATTACCGCACTGACCTTTGA
AA sequence Show only first row Show all	>Potri.015G120400.6 pacid=42775956 polypeptide=Potri.015G120400.6.p locus=Potri.015G120400 ID=Potri.015G120400.6.v4.1 annot-version=v4.1 MNSIIGIEMSRSLVFSTNIPLKFSQKPISFSLFNHSKLCVPQRFSENSQCGLQRFQLLSMKLARNVCTKAALSEMKYPRVAASSTGPIPPSQLIQVVETA AKTGAEVVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVGRRNFGDHLILGEEGGIIGDTLSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQGNPAA ASVVEFVGGPMAWNTRTFSATAGGGAFCNGQKIHASPTAQVEQSLLVTGFGYEHDDPWATNIELFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYR LKPWDMAAGVLIVEEAGGTVSRMDGGKFCVFDRSVLVSNGVLHAKLLERIAPATEKLKSKGIDFSLWYKPENYRTDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.015G120400 [exp]	0	1
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	1.00	0.7897
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	5.19	0.7262
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	7.93	0.7209
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	11.13	0.7235	PDF1.2
AT4G18460			D-Tyr-tRNA(Tyr) deacylase fami...		Potri.011G062200 [exp]	15.00	0.6978
AT3G28700			Protein of unknown function (D...		Potri.017G077000 [exp]	16.73	0.6233
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	23.74	0.7355	FDH1
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	29.66	0.6983
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.004G031800 [exp]	37.22	0.7224
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.012G143800 [exp]	49.91	0.6122

Compare expression of checked genes

Potri.015G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.