Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58440 746 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G37760 728 / 0 SQE3 squalene epoxidase 3 (.1) AT2G22830 711 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 480 / 7e-166 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 462 / 8e-159 SQE6 squalene monoxygenase 6 (.1) AT5G24140 443 / 2e-151 SQP2 squalene monooxygenase 2 (.1) AT5G24155 90 / 2e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007600 [exp] 775 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.005G146700 [exp] 754 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.002G114500 [exp] 753 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 660 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 641 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 637 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 181 / 1e-55 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 124 / 8e-34 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121412 [exp] 60 / 6e-11 AT1G58440 42 / 1e-05 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018654 [exp] 781 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 761 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039649 [exp] 747 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 737 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10000593 [exp] 44 / 0.0003 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G120900.2 pacid=42775543 polypeptide=Potri.015G120900.2.p locus=Potri.015G120900 ID=Potri.015G120900.2.v4.1 annot-version=v4.1 ATGTTTTCTGATCAGTCTCTAGTAATGGAATATCAGTATCTATTGGGAGGAGTCATTGCTTCTGTTTTTGTTTGGGGGTTACTTTTAGCTTTTCATGCAA AAGGAAGGAAAAAGGTTAGAGTTTCAATGGATATTCCAAGGGACAGTACTTTGAAAAGCTCTGAAAATGGAATGAGCTGGGCACGCAATCCTGAAAGCAC AGATATAATCATTGTTGGTGCTGGTGTTGCCGGTTCAGCTCTTGCTTACACTCTTGGAAAGGATGGTCGCAGAGTACACGTAATTGAAAGAGACTTGACA GAGCCTGACAGAATTGTTGGAGAACTCCTACAACCTGGAGGTTACCTGAAATTAATTGAATTGGGCCTTGAAGACTGTGTGAGTGACATTGATGCTCAAA GAGTGCTTGGATATGCGATCTTCAAAGATGGGAAAAGTACCAAACTATCATATCCCTTAGAGAACTTTCCTTCAGATGTTGCTGGAAGAAGCTTTCATCA TGGCCGTTTTATTCAGAAAATGCGAGAGAAAGCTGCAACTCTTTCCAATGTCAAACTGGAACAAGGAACTGTAACATCTCTGCTGAAAGAAAACGGAACT ATCAAAGGAGTTCAGTACAAAACCAGGGTAGGTCAAGAGTTGACAGCATATGCTCCATTAACAATAGTCTGCGATGGCTGTTTTTCAAATCTGCGGCAGT CCCTTTGCAATCCCAAGGTTGAAATCCCATCCTGTTTTGTTGGTTTGGTGCTGGAGAACTGCAACCTTCCATATGCAAATCATGGACATGTTGTTCTAGC TGACCCATCTCCAATCTTGTTTTATCCTATTAGGGATACAGAGATTCGCTGTTTGGTAGATGTTCCTGGACAGAAAGTACCTTCTGTTTCTAATGGCGAG ATGTCTCACTATCTGAAAAATACAATAGCTCCTCAGATTCCTCCTGAGCTGCATGATGCTTTCATTTCTGCAATTGACAAAGGGGGCATGAGAACAATGA CAAACAGAAGCATGCCAGCTTCTCCTTACCCTACTCCAGGTGCACTTTTAATGGGAGATGCATTCAACATGAGGCATCCCTTAACTGGAGGAGGAATGAC TGTGGCTCTATCAGACATTGTGCTAGTACGTGACCTTCTTCGACCTCTGAACAATCTCAATGATGCGTCTTCCCTTTGCAATTATCTCGAGTCCTTCTAC ACACTGCGTAAGCCTGTGGCATCTACCATTAACACATTGGCAGGTGCCCTGTACAAGGTGTTTAGCGCATCACCTGATCCAGCTAGAAACGAAATGCGCC AAGCATGTTTCGAATACTTGAGCCTTGGAGGAGTATTTTCGAAAGGGCCAATAGCTCTACTTTCTGGTCTAGACCCTCGGCCGTTGAGCTTGGTTCTCCA TTTCTTTGCAGTGGCTATCTATGGAGTCAGCCGCTTAATGCTTCCCTTACCATCTCCTAAACGGCTGTGGACCAGTGCTAGATTGATTTCGGGGGCATCA GGAATCATCTTTCCTATAATAAAGGGGGAAGGGGTTAGACAAATGTTCTTCCCTGTAATGGTACCAGCATACCACAGATCTCCTCCAATGGCTTGA
AA sequence Show only first row Show all	>Potri.015G120900.2 pacid=42775543 polypeptide=Potri.015G120900.2.p locus=Potri.015G120900 ID=Potri.015G120900.2.v4.1 annot-version=v4.1 MFSDQSLVMEYQYLLGGVIASVFVWGLLLAFHAKGRKKVRVSMDIPRDSTLKSSENGMSWARNPESTDIIIVGAGVAGSALAYTLGKDGRRVHVIERDLT EPDRIVGELLQPGGYLKLIELGLEDCVSDIDAQRVLGYAIFKDGKSTKLSYPLENFPSDVAGRSFHHGRFIQKMREKAATLSNVKLEQGTVTSLLKENGT IKGVQYKTRVGQELTAYAPLTIVCDGCFSNLRQSLCNPKVEIPSCFVGLVLENCNLPYANHGHVVLADPSPILFYPIRDTEIRCLVDVPGQKVPSVSNGE MSHYLKNTIAPQIPPELHDAFISAIDKGGMRTMTNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLVRDLLRPLNNLNDASSLCNYLESFY TLRKPVASTINTLAGALYKVFSASPDPARNEMRQACFEYLSLGGVFSKGPIALLSGLDPRPLSLVLHFFAVAIYGVSRLMLPLPSPKRLWTSARLISGAS GIIFPIIKGEGVRQMFFPVMVPAYHRSPPMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.015G120900 [exp]	0	1
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Potri.001G080600 [exp]	3.46	0.7642
AT4G10270			Wound-responsive family protei...		Potri.019G117402 [exp]	5.38	0.7809
AT5G08570			Pyruvate kinase family protein...		Potri.008G002500 [exp]	6.63	0.6890
AT4G10265			Wound-responsive family protei...		Potri.019G117700 [exp]	8.48	0.7708
AT1G64830			Eukaryotic aspartyl protease f...		Potri.018G097801 [exp]	9.89	0.6293
AT2G36460			Aldolase superfamily protein (...		Potri.006G165700 [exp]	15.19	0.7351
AT5G58375			Methyltransferase-related prot...		Potri.019G127900 [exp]	17.97	0.6965
AT1G33055			unknown protein		Potri.011G149400 [exp]	18.33	0.7449
AT3G10040	Trihelix		sequence-specific DNA binding ...		Potri.006G117500 [exp]	18.73	0.7239
					Potri.001G137100 [exp]	22.24	0.7188

Compare expression of checked genes

Potri.015G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.