Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19860 781 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G03310 427 / 7e-146 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT1G27480 69 / 3e-12 alpha/beta-Hydrolases superfamily protein (.1) AT5G13640 54 / 2e-07 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 52 / 8e-07 Lecithin:cholesterol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121596 [exp] 1033 / 0 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 459 / 2e-158 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.014G014400 [exp] 59 / 3e-09 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G171000 [exp] 57 / 2e-08 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 56 / 4e-08 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 45 / 0.0001 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017142 [exp] 860 / 0 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018310 [exp] 859 / 0 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026853 [exp] 442 / 1e-151 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10020225 [exp] 363 / 9e-118 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10018308 [exp] 99 / 1e-21 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10007728 [exp] 62 / 5e-10 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10018664 [exp] 61 / 1e-09 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10017165 [exp] 57 / 4e-08 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 56 / 4e-08 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10021564 [exp] 54 / 3e-07 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G121000.1 pacid=42776474 polypeptide=Potri.015G121000.1.p locus=Potri.015G121000 ID=Potri.015G121000.1.v4.1 annot-version=v4.1 ATGGCTATGTTACTAGAAGACATTGTTCGATCGGTGGAATTATGGCTACGCTTGATAAAAAAACCGCAACCTTATGTTGATCCGAATCTCGACCCGGTCC TTTTAGTCCCGGGTATCGCCGGTTCGATTCTAAAAGCGGTGGATAAGGAGAATGGTGATAAAGAAGAACGGGTTTGGATTCGGATTCTTGCTGCTGATTA CACGTGCCGAACTAAGCTCTGGTCTCGGTTTGATCCTCAAACTGGAAGGTCTGTGACTTTAGATCCAAAGAGAAATATTGTGGTTCCAGAAGATAGATAT GGATTGCATGCTATTGATGTGTTGGATCCTGACATGATAATAGGACGTGACTGTGTTTATTATTTCCATGATATGATTGTTGAAATGATCAAGTGGGGTT TTCAAGAGGGAAAAACTCTTTTCGGGTTTGGGTATGATTTTCGGCAAAGCAACAGGTTGCCAGAGACATTAGAGCGCCTTGCTAAAAAGTTAGAGTCAGT GTATCAAGCATCAGGAGGGAAAAAGATAAACATCATAAGTCATTCAATGGGGGGTCTGCTAGTTAAATGCTTCATGTCCCTGCACAGTGATATATTTGAG AAATATGTGAAGAATTGGATTGCCATTGCTGCCCCATTCCGGGGTGCACCTGGGTACGTTACATCTACCTTTCTAAATGGAATGTCCTTTGTTGAAGGGT GGGAGCAGAACTTTTTTATATCAAAATGGAGCATGCACCAGCTGCTTATTGAATGTCCATCAATATATGAATTGATGGCTTGTCCACATTTTCATTGGCA ACATCTTCCTGTTTTGGAAATCTGGAGAGAGAAGCAAGATAGCGATGAAAATTCTCAGATAATCCTAGAGTCATATTCCCCTGAAGAGAGCATCCAAATT TTCAAAGATGCTCTTTCAAGTAACACGGTCAATTATGATGGAGAGGATATTCCATTACCTTTTAACTTAGATATCTTGAAATGGGCTGATGAAACACAGA AGGTTTTGTCTCATGCTAAAGTTCCTCCTGGAGTTAAATTCTACAATATTTACGGGATCAGTCTGGAAACGCCTCACACTGTTTGCTATGGAAGTGCAGA GGTACCTGTCGCTGATCTACCAGAATTGCAATTTTGTGAGCCTAAATACATTTGTGTTGACGGTGATGGTACAGTTCCTGCTGAATCAGCCAAGGCTGAT GGTCTCAATGCAGAAGCAAGGGTTGGAGTGCCTGGTGAGCACCGTGGAATTCTCAGCGACCATCATTTATTCAGGATTGTAAAGCATTGGCTGAAGGCAG ATTCTGATCCTTTCTACAATCCAATAAATGATTACGTCATTCTACCCACTGCATTCGAAATGGAAAGGCACAAAGAGAGTGGATTACAATTTACTTCACT TAAAGAGGAGTGGGAAATCATTTCAGAAGAACAAGATGACCATGATAATATGGTTAATAGAAAACCTTTCGTGAGTTCAATTTGCATTTCTCAGGCAGGA GATTATCAATCTTCACCCGCAGAGGCTTGTGCTACTGTAACCGTGCATCCTCAGAGTGAGGGGAAGCAGCACGTTGAGCTAAATGCCGTGAGTGTATCCG TCGATGCCTGA
AA sequence Show only first row Show all	>Potri.015G121000.1 pacid=42776474 polypeptide=Potri.015G121000.1.p locus=Potri.015G121000 ID=Potri.015G121000.1.v4.1 annot-version=v4.1 MAMLLEDIVRSVELWLRLIKKPQPYVDPNLDPVLLVPGIAGSILKAVDKENGDKEERVWIRILAADYTCRTKLWSRFDPQTGRSVTLDPKRNIVVPEDRY GLHAIDVLDPDMIIGRDCVYYFHDMIVEMIKWGFQEGKTLFGFGYDFRQSNRLPETLERLAKKLESVYQASGGKKINIISHSMGGLLVKCFMSLHSDIFE KYVKNWIAIAAPFRGAPGYVTSTFLNGMSFVEGWEQNFFISKWSMHQLLIECPSIYELMACPHFHWQHLPVLEIWREKQDSDENSQIILESYSPEESIQI FKDALSSNTVNYDGEDIPLPFNLDILKWADETQKVLSHAKVPPGVKFYNIYGISLETPHTVCYGSAEVPVADLPELQFCEPKYICVDGDGTVPAESAKAD GLNAEARVGVPGEHRGILSDHHLFRIVKHWLKADSDPFYNPINDYVILPTAFEMERHKESGLQFTSLKEEWEIISEEQDDHDNMVNRKPFVSSICISQAG DYQSSPAEACATVTVHPQSEGKQHVELNAVSVSVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.015G121000 [exp]	0	1
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	1.41	0.8456
AT1G80570			RNI-like superfamily protein (...		Potri.017G053400 [exp]	1.73	0.8489
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.014G006000 [exp]	3.46	0.8217
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	3.87	0.8104
AT3G51130			unknown protein		Potri.005G117200 [exp]	4.24	0.8060
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	7.07	0.8040
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.016G056500 [exp]	7.48	0.7905	HSFB3.2
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	10.95	0.8064
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.004G184500 [exp]	29.24	0.7328
AT2G24762		ATGDU4	glutamine dumper 4 (.1)		Potri.004G108680 [exp]	33.46	0.7702

Compare expression of checked genes

Potri.015G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.