Plant FIBer expression Database

Potri.015G121101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45040 209 / 3e-69 CYTC6A cytochrome c6A, Cytochrome c (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036207
[exp]
185 / 3e-60 AT5G45040 188 / 5e-62 cytochrome c6A, Cytochrome c (.1)
Lus10038346
[exp]
159 / 8e-50 AT5G45040 164 / 2e-52 cytochrome c6A, Cytochrome c (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0318 Cytochrome-c PF13442 Cytochrome_CBB3 Cytochrome C oxidase, cbb3-type, subunit III
Representative CDS sequence
>Potri.015G121101.1 pacid=42774885 polypeptide=Potri.015G121101.1.p locus=Potri.015G121101 ID=Potri.015G121101.1.v4.1 annot-version=v4.1
ATGTATTTTGTAGCCTATAATTCATCAACCATCCCCCTCGCCTGTCTCCACCGCCTTCTCCATTTACGCTCTCTTGCCACCAATCTAAAGCCAAACCCCA
AGATGTGGATTCCATCTGTGATGTCTTGTTGCAGCCATGGACCTTATAACTCCCTCTTGATGAAGCAAGGAGAAAGCCAAAACCCAGTTGTTTTAAAGCA
AAAGGAGGTGAAGCTCGTTAAGAGCTTGGCTCCACCTTTAATGGCTGCCCTTGTAGCCTTATCTCCCATTGTCAACACCCCAGTGTCACTAGGACAAACC
CTAGATGTACAAAGAGGAGCCTCATTGTTTAGCCGCACTTGCATTGGCTGTCATGATGCTGGTGGAAACATAATTCAACCCGGTGCAACGCTCTTCACAA
AGGACCTACAAAGGAATGGAGTAGACACTGAAGAAGAAATTTATCGCATAACATACTTTGGCAAAGGAAGAATGCCTGGATTCGGTGAGAGTTGTACTCC
AAGAGGACAGTGCACATTTGGACCACGGTTGCAGGATGAAGAGATTAAGCTCTTGGCTCAATTTGTGAAGTCACAAGCAGATCAAGGCTGGCCAAACATA
GAAATTAGTCAAGATTGA
AA sequence
>Potri.015G121101.1 pacid=42774885 polypeptide=Potri.015G121101.1.p locus=Potri.015G121101 ID=Potri.015G121101.1.v4.1 annot-version=v4.1
MYFVAYNSSTIPLACLHRLLHLRSLATNLKPNPKMWIPSVMSCCSHGPYNSLLMKQGESQNPVVLKQKEVKLVKSLAPPLMAALVALSPIVNTPVSLGQT
LDVQRGASLFSRTCIGCHDAGGNIIQPGATLFTKDLQRNGVDTEEEIYRITYFGKGRMPGFGESCTPRGQCTFGPRLQDEEIKLLAQFVKSQADQGWPNI
EISQD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45040 CYTC6A cytochrome c6A, Cytochrome c (... Potri.015G121101
[exp]
0 1
AT4G01030 pentatricopeptide (PPR) repeat... Potri.014G097000
[exp]
2.44 0.9218
AT5G15140 Galactose mutarotase-like supe... Potri.017G080000
[exp]
3.87 0.9174
AT2G44920 Tetratricopeptide repeat (TPR)... Potri.010G200000
[exp]
3.87 0.9251
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.002G120600
[exp]
6.40 0.8467
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.001G253700
[exp]
8.36 0.8876
AT2G29150 NAD(P)-binding Rossmann-fold s... Potri.005G039300
[exp]
10.00 0.9034
AT3G51550 FER FERONIA, Malectin/receptor-lik... Potri.017G096400
[exp]
11.13 0.8554
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Potri.002G077600
[exp]
12.64 0.9016
AT3G45890 RUS1 ROOT UVB SENSITIVE 1, Protein ... Potri.001G193300
[exp]
17.74 0.8509
AT2G17880 Chaperone DnaJ-domain superfam... Potri.005G240700
[exp]
19.69 0.8195

Potri.015G121101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.