Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45030 822 / 0 Trypsin family protein (.1.2) AT2G35155 808 / 0 Trypsin family protein (.1) AT3G12950 654 / 0 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121700 [exp] 1086 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2) Potri.011G143200 [exp] 840 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038347 [exp] 979 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2) Lus10036208 [exp] 971 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2) Lus10018312 [exp] 879 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2) Lus10017140 [exp] 860 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2) Lus10031205 [exp] 750 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2) Lus10031785 [exp] 740 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G121400.10 pacid=42776204 polypeptide=Potri.015G121400.10.p locus=Potri.015G121400 ID=Potri.015G121400.10.v4.1 annot-version=v4.1 ATGGACAGGAACAGATTAGGTTTAAGGATTCATCACTCTGGATCATCACAATCAGAGGAATCTGCTTTAGATCTGGAAAGAAACTACTGCAGTCATCCTA ATTTGCTGTGGTCAAGTCCGTCGCCACTTCAACCTTTCGCTTCAGGTGGGCAGCACTCTGAGAGTAATGCTGCCTACTTCTCCTGGCCCACATTGAGTCG ACTAAATGATGCAGCAGAAGTCAGAGCAAACTATTTTGGAAACCTCCAGAAGGGAGTGCTCCCTGAAACTCTTGGGAGGTTGCCATCAGGTCAGCGAGCT ACCACCTTGCTTGAGCTGATGACCATTAGGGCATTTCATAGCAAAATATTGCGGCGGTTTAGTCTTGGCACAGCAATTGGGTTTAGAATCCGGAGGGGTG ATTTGACTGATATTCCTGCAATTCTTGTTTTTGTTGCCCGTAAAGTTCACAGGCAATGGCTCAGCCATGTCCAGTGCCTACCTGCAGCCCTTGAGGGACC AGGAGGTGTATGGTGTGATGTGGATGTCGTAGAATTCTCATATTATGGTGTTCCTGCAGCAACTCCAAAGGAACAGTTGTATACTGAGCTGGTAGATGGC TTGAGAGGAAGTGACCCGTGCATTGGGTCCGGATCTCAGGTTGCTAATCAAGAGACCTACGGAACCCTGGGTGCGATTGTGAAAAGCCGAACAGGTAACC GCCAGGTTGGTTTCCTCACAAATCGGCATGTTGCAGTTGACTTGGACTACCCAAACCAGAAGATGTTTCATCCTTTGCCACCAAGCCTCGGACCTGGGGT GTATTTGGGTGCTGTGGAGAGAGCAACCTCATTTATCACCGATGAGCTTTGGTATGGCATATTTGCTGGAACAAACCCAGAAACATTTGTCAGAGCAGAT GGGGCCTTCATTCCTTTTGCAGAAGATTTTAACATGAACAATGTAAATATAACTGTCAAAGGTGTTGGTGAGGTTGGTGATGTCCATGTTATAGATTTGC AAGCTCCAATTAATAGTCTCATTGGAAGGCAAGTGGTCAAAGTTGGAAGGAGTTCTGGCTTGACTACTGGGACCATAATGGCCTACGCACTAGAGTACAA TGATGAGAAAGGGATTTGTTTCTTTACCGATTTTCTCGTTGTCGGTGAGAACCAACAGACATTTGATCTTGAAGGTGACAGTGGAAGCTTGATTCTCTTA ACAGGCCGGGATTGTGAGAAGCCACGGCCAGTTGGGATCATTTGGGGTGGGACGGCTAATCGTGGTAGGTTGAAACTTAAAGTTGGCCAACCCCCAGAAA ATTGGACCAGTGGAGTTGATCTTGGTCGCCTTCTTGACCTCCTTGAACTTGATATCATCACAACCAATGAGGGGCTTCAAGTTATTGATATAGCTGCAAT TCAAGATCAAAGAAATCCGTTGGCACAAGGAATAGATTCTACTGTTGGAGAGTCATCTCCTCTAGACCGAGTGCCATCGAAAGAAAAAATTGAAGAAAAC TTTGAGCCTCTAAATTTAAACATTCAGCAAGTGACAGGTGAAGGTGAGTCCCAGCACGGACAGACCCCACTTTTCATTGGCCCTGAATTTCATATAGAAG ATGCGGTAGAAGCTTCTCCAAATGTGGAACATCAATTCATCCCAAGTTTCTCGGGGAGATCTCCAATGCATGATAACACACCCCAGGAAAACCCAGAATT GAAAAATCTCTCAGCATTAAGAAGCGACTCTGATGAGATGTGTTTTTCATTGCATTTAGGTGAGCCTGAACCAAAGAGAAGAAAGCAGTCAGATTAA
AA sequence Show only first row Show all	>Potri.015G121400.10 pacid=42776204 polypeptide=Potri.015G121400.10.p locus=Potri.015G121400 ID=Potri.015G121400.10.v4.1 annot-version=v4.1 MDRNRLGLRIHHSGSSQSEESALDLERNYCSHPNLLWSSPSPLQPFASGGQHSESNAAYFSWPTLSRLNDAAEVRANYFGNLQKGVLPETLGRLPSGQRA TTLLELMTIRAFHSKILRRFSLGTAIGFRIRRGDLTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGVPAATPKEQLYTELVDG LRGSDPCIGSGSQVANQETYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDELWYGIFAGTNPETFVRAD GAFIPFAEDFNMNNVNITVKGVGEVGDVHVIDLQAPINSLIGRQVVKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILL TGRDCEKPRPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLELDIITTNEGLQVIDIAAIQDQRNPLAQGIDSTVGESSPLDRVPSKEKIEEN FEPLNLNIQQVTGEGESQHGQTPLFIGPEFHIEDAVEASPNVEHQFIPSFSGRSPMHDNTPQENPELKNLSALRSDSDEMCFSLHLGEPEPKRRKQSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	0	1
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	1.73	0.8127
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	2.44	0.8260
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	2.44	0.8196
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	2.82	0.7988
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.009G008200 [exp]	3.74	0.7685
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	5.56	0.7406
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.008G064800 [exp]	7.48	0.7835
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	8.36	0.7984
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Potri.016G144200 [exp]	8.36	0.7755
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	10.58	0.7618

Compare expression of checked genes

Potri.015G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.