Plant FIBer expression Database

Potri.015G121500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31175 114 / 1e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018313
[exp]
120 / 3e-36 ND 112 / 4e-32
PFAM info
Representative CDS sequence
>Potri.015G121500.1 pacid=42774952 polypeptide=Potri.015G121500.1.p locus=Potri.015G121500 ID=Potri.015G121500.1.v4.1 annot-version=v4.1
ATGGAGTGCGAGAGGCTACACAAGGCGCTTTATGATTGCTACCGCCGAGTCCCGGCGGGAACAGGGCGGGAAACGGCGTGTCGGCACCTGAACAGGGCCT
TAGCAGAGTGCATGGTAGCGGTGGTTTGTCCTGATGAGTCAGAGGCTGTTCGTAGTTTGTGTTCAAGTGGTGGGACCAAACTTAAACGGTCTCAATGCCA
AGAAGCCCAGCTTGCACTTTCTGTCTGTCTCTCTTCACATCAACAAGAATGA
AA sequence
>Potri.015G121500.1 pacid=42774952 polypeptide=Potri.015G121500.1.p locus=Potri.015G121500 ID=Potri.015G121500.1.v4.1 annot-version=v4.1
MECERLHKALYDCYRRVPAGTGRETACRHLNRALAECMVAVVCPDESEAVRSLCSSGGTKLKRSQCQEAQLALSVCLSSHQQE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31175 unknown protein Potri.015G121500
[exp]
0 1
AT5G01780 2-oxoglutarate-dependent dioxy... Potri.016G132300
[exp]
5.47 0.7784
AT5G25360 unknown protein Potri.018G130900
[exp]
6.32 0.7936
AT1G68430 unknown protein Potri.008G123800
[exp]
7.74 0.7434
AT5G63905 unknown protein Potri.014G015866
[exp]
14.69 0.7545
AT5G63000 Mitochondrial import inner mem... Potri.015G078600
[exp]
15.49 0.6971
AT3G24030 hydroxyethylthiazole kinase fa... Potri.001G053900
[exp]
15.68 0.7851
AT4G32330 TPX2 (targeting protein for Xk... Potri.018G027500
[exp]
18.11 0.7796
AT2G15280 Reticulon family protein (.1.2... Potri.009G096200
[exp]
24.89 0.7240
AT1G71950 Proteinase inhibitor, propepti... Potri.013G112800
[exp]
28.98 0.7306
AT1G32400 TOM2A tobamovirus multiplication 2A ... Potri.003G087800
[exp]
29.32 0.7337 Pt-TOM2.1

Potri.015G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.