Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19880 600 / 0 Glutathione S-transferase family protein (.1.2.3) AT5G45020 561 / 0 Glutathione S-transferase family protein (.1.2) AT5G44990 492 / 7e-176 Glutathione S-transferase family protein (.1.2.3) AT5G44000 223 / 2e-69 Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192300 [exp] 224 / 6e-70 AT5G44000 493 / 2e-174 Glutathione S-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036209 [exp] 583 / 0 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10038348 [exp] 583 / 0 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10014304 [exp] 515 / 0 AT4G19880 499 / 3e-179 Glutathione S-transferase family protein (.1.2.3) Lus10027233 [exp] 246 / 1e-78 AT5G44000 508 / 2e-180 Glutathione S-transferase family protein (.1) Lus10005510 [exp] 160 / 5e-47 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3) Lus10038943 [exp] 87 / 9e-19 AT5G44000 186 / 1e-55 Glutathione S-transferase family protein (.1) Lus10026012 [exp] 0 / 1 AT5G45020 123 / 3e-39 Glutathione S-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13409 [poplar] [flax] GST_N_2 Glutathione S-transferase, N-terminal domain CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G121600.1 pacid=42775135 polypeptide=Potri.015G121600.1.p locus=Potri.015G121600 ID=Potri.015G121600.1.v4.1 annot-version=v4.1 ATGGTTTGTGTGTTCACCAAACCTCACTTATTAGCACTTGGACCTAACAAGAACAACATCTCCTTTATCCTCCCACAATTATCTTTGAAGTGCAATCTTC ACATGGCTCGATCTGCAATTGATGAGACTTCAGATACTGGTGCATTTAAGAGAACGGCTTCAACATTTCGCAACTTCATTTCAAAAGAACCAAATTCACA ATTCCCACCAGAATCTGGAAGGTATCATCTTTATGTGTCCTATGCTTGTCCTTGGGCTTCTAGGTGTCTTGCATACTTGAAGATTAAAGGACTTGAAAAG GCCATAGCGTTCACGTCTGTGAAACCCATATGGGAAAGAACAAAAGAGAGTGATGAGCATATGGGGTGGGTATTTCCTGCATCAGAGACTGAGGAAGCAG GTGCTGAGCCTGATCCTTTGAATGGGGCAAGAAGTATAAGAGAACTTTATGAGCTTGCAAGTACAAACTATGCCGGAAAGTATACAGTTCCTGTGCTGTG GGATAAGAAGCTCAAGACAATCGTTAATAATGAGAGTTCAGAAATTATTCGTATGTTTAATACTGAATTCAATGATATAGCTGAAAATGCAGCTTTGGAT TTGTATCCATCTCACCTGCAAGCACGAATTGATGAAACCAATGAATGGGTTTATAATGGGATAAATAATGGTGTTTATAAATGTGGGTTTGCAAGGAAGC AAGGGCCTTATGAGGAGGCCGCAATCCAGTTATATGAAGCCTTAGATAAATGTGAGGAGATACTTGGCAGGCAAAGATATATCTGTGGAAACACACTTTC TGAAGCAGATATTAAGTTGTTTGTCACCCTTATAAGATTTGATGAGGTTTATGCAGTTCACTTCAAATGCAACAAAAAGCTGCTCCGAGATTACCCGAAT ATGTTCAACTACACCAAAGACATCTTCCAAATTCCTGGCATGAGTAGCACTGTTAACATGCAGCATATTAAGCGGCATTATTATGGAAGTCATCCCACTG TCAATCCCTTTGGAATCATTCCTCTCGGCCCTGACATTGACTATTCTTCACCCCACGACAGGAACAGGTTTTCTTCATAG
AA sequence Show only first row Show all	>Potri.015G121600.1 pacid=42775135 polypeptide=Potri.015G121600.1.p locus=Potri.015G121600 ID=Potri.015G121600.1.v4.1 annot-version=v4.1 MVCVFTKPHLLALGPNKNNISFILPQLSLKCNLHMARSAIDETSDTGAFKRTASTFRNFISKEPNSQFPPESGRYHLYVSYACPWASRCLAYLKIKGLEK AIAFTSVKPIWERTKESDEHMGWVFPASETEEAGAEPDPLNGARSIRELYELASTNYAGKYTVPVLWDKKLKTIVNNESSEIIRMFNTEFNDIAENAALD LYPSHLQARIDETNEWVYNGINNGVYKCGFARKQGPYEEAAIQLYEALDKCEEILGRQRYICGNTLSEADIKLFVTLIRFDEVYAVHFKCNKKLLRDYPN MFNYTKDIFQIPGMSSTVNMQHIKRHYYGSHPTVNPFGIIPLGPDIDYSSPHDRNRFSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19880			Glutathione S-transferase fami...		Potri.015G121600 [exp]	0	1
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	2.00	0.8410
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.002G139800 [exp]	10.00	0.8031
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.014G100800 [exp]	16.43	0.8059	MYB201
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033900 [exp]	16.70	0.8458
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.001G106800 [exp]	22.97	0.8272
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270700 [exp]	33.88	0.8142
AT2G31945			unknown protein		Potri.001G230900 [exp]	33.98	0.7948
AT5G41761			unknown protein		Potri.006G017700 [exp]	35.42	0.8217
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025350 [exp]	35.59	0.7356
AT1G02330			unknown protein		Potri.014G110200 [exp]	40.18	0.7645

Compare expression of checked genes

Potri.015G121600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.