Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19890 923 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 274 / 2e-81 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 258 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 252 / 2e-73 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G74580 249 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 239 / 7e-70 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G07290 243 / 5e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 237 / 1e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 236 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 232 / 8e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105600 [exp] 258 / 2e-75 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 254 / 2e-75 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 250 / 1e-73 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 249 / 3e-73 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 249 / 4e-73 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 251 / 7e-73 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G014500 [exp] 248 / 1e-71 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 244 / 1e-71 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 241 / 3e-71 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006083 [exp] 965 / 0 AT4G19890 844 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000428 [exp] 457 / 1e-157 AT4G19890 407 / 1e-138 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009444 [exp] 340 / 1e-100 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10042529 [exp] 267 / 1e-76 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 263 / 8e-76 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 261 / 6e-74 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 258 / 6e-74 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 251 / 2e-72 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 245 / 2e-71 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10006373 [exp] 243 / 9e-70 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G121700.1 pacid=42775781 polypeptide=Potri.015G121700.1.p locus=Potri.015G121700 ID=Potri.015G121700.1.v4.1 annot-version=v4.1 ATGTTGTCTTTTTTCACTCTCAAATTTCATGGACTCAAAGCCAAACCCTCACTCAATCCTGTATCTTACACACCTCTCAAAATACTATGTTACTACCACA ACAGTACTGATAATAACCTCAATGACAACAACATCAACAATGGGTGCAACACCCCAATTTCACCACCACCGCAAAAACAACATTTACAGCAGCATTCTCC TGTTAGATCAATTTGTTCACTTGTCTGTGAATCTTACTCCCAACAAACCCCACATGTGAGACTGTTGCAATCTCCAAGTCTCAATCTTTCTGTAAATCCT GATTCATTAACCCATGAACAGGCTATTACTGTTGTTGCTTCACTGGCAAGTGAGGCAGGGTCAATGGTGGCATTGAGTTTTTTCAATTGGGCAATTGGGT TTCCTAAATTTAGGTACTTTATGAGGTTTTATATTGTTTGTGCAACTTCTTTTATTGGTAATGAGAATTTTGAGAGAGCCCATGAAGTTATGGATTGTAT GGTGAGGGTTTTTGCTGAGATTGGGAAGTTTCAGGAGGCTGTTAATATGGTTATTGAAATGGAAAATCATGGGTTGGTTTTGACTGTTAGGACTTTGAAT TGTGTTACTGGTGTTGCTGGTGAAATGGGGTTGGTTGATTATGCAGAGAACGTGTTTGATGAAATGCGCGTGAGAGGGGTTTGTCCTGATTCTGTAAGCT ATAAGTTGATGGCTATTGCTTATTGTAGGATGGGGAGGATTTCTGACACGGATAGGTGGTTAAAGGATATGGTCCGTAGAGGTTTTGTTGTTGATAATGC GACTTGTACTTTGATGATTAGCACGTTTTGTGAGAAGGGTTTTGCGAGTAGAGTGTTTTGGTATTTTGATAAGTGGGTGGAATTGGGTTTAAAACCAAAT TTGATAAATTTTACATCGTTGATTAATGGGTTGTGCAAGAGGGGTAGCATTAAGCAAGCGTTTGAGATGTTGGAGGAAATGGTTAAGAAAGGTTGGAAAC CGAATGTATATACGCACACGGCCTTGATTGATGGGTTGTGTAAGAAGGGGTGGACTGAAAAGGCATTTAGGTTGTTCCTTAAGCTTGTTAGGAGTGATGA TTACAAACCAAACGTGCATACATACACTTCCATGATTCATGGGTATTGTAAGGAAGATAAGTTGAATCGAGCAGAGATGTTGTTGAGCAGAATGAAAGAA CAAGGATTGGTTCCTAACACAAAAACATACACTTGTCTCATTGATGGGCACAGTAAAGCAGGGAATTTTGAAAAGGCATATGAGTTGATGGATTTAATGG GTAAAGAAGGTTTCAGTGCCAATATTTTCACATATAATGCGTTTATAGATAGCCTCTGTAAAAAGGGAAGGTTTCTAGAGGCTTGTAAACTGCTTAAGAA GGGATTTCGACTTGGATTACAAGCTGATACTGTAACATATACCATCCTCATATCTGAGCTCTGCAGGCGAGCTGATACCAGGGAGGCCCTTGTATTTTTC AGTAAGATGTTTAAAGCTGGAGTACAACCTGATATGCATACATACAACACACTGATTGCTGCCTTCTCAAGACAAAGAAGAATGGAAGAAAGTGAGAAAC TTTTTGCAGAAGCTGTTGGTCTTGGCTTGGTTCCAACCAAGGAAACATACACATCCATGATATGTGGATACTGTCGTGATAGAAATGTTAGTTTGGCTCT AAAGTTTTTCAAGAGGATGAGTGACCATGGCTGCACACCTGACAGTCTTACATATGGGGCTCTGATAAGTGGTCTTTGCAAAGAATCCAAGTTGGATGAG GCATGCCAGTTATATGAAGCTATGGTTGACAAGGGGCTGTCCCCATGTGAAGTTACTAGGCTAACACTAGCATATGAGTATTGCAAACAAGATGATTCTG CTACTGCCATGGTTATATTGGAGAGGCTAGACAAAAAACTCTGGATTCGTACAGTTAACACATTGATCAGGAAGCTTTGTAGTGAGAGAAAAGTAGGCAT GGCTGTATTGTTCTTTCATAAATTATTGGACAAGGACCAGAATGTGGATCGTGTAACTTTGACTGCATTTACTACTGCATGCTACGAGAGCAACAAGTAT GCTCTTGTTTCTGACTTGTCTGAGAGGATCTCCAAAGGAATTGGTTAG
AA sequence Show only first row Show all	>Potri.015G121700.1 pacid=42775781 polypeptide=Potri.015G121700.1.p locus=Potri.015G121700 ID=Potri.015G121700.1.v4.1 annot-version=v4.1 MLSFFTLKFHGLKAKPSLNPVSYTPLKILCYYHNSTDNNLNDNNINNGCNTPISPPPQKQHLQQHSPVRSICSLVCESYSQQTPHVRLLQSPSLNLSVNP DSLTHEQAITVVASLASEAGSMVALSFFNWAIGFPKFRYFMRFYIVCATSFIGNENFERAHEVMDCMVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLN CVTGVAGEMGLVDYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKPN LINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKE QGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFF SKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFKRMSDHGCTPDSLTYGALISGLCKESKLDE ACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWIRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTACYESNKY ALVSDLSERISKGIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	0	1
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	1.00	0.9196
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	4.89	0.9147
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	6.00	0.9028
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	6.00	0.9113
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	7.74	0.9006
AT1G09220			Pentatricopeptide repeat (PPR)...		Potri.013G054400 [exp]	10.95	0.8638
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	12.64	0.8933
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	13.41	0.8809
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	13.49	0.8818
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	14.42	0.8843

Compare expression of checked genes

Potri.015G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.