Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35150 377 / 3e-131 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT2G17230 355 / 8e-122 EXL5 EXORDIUM like 5 (.1) AT5G51550 334 / 3e-114 EXL3 EXORDIUM like 3 (.1) AT5G64260 132 / 7e-36 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT1G35140 131 / 1e-35 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT4G08950 128 / 2e-34 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT5G09440 102 / 5e-25 EXL4 EXORDIUM like 4 (.1) AT3G02970 61 / 2e-10 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167800 [exp] 342 / 7e-117 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.004G206600 [exp] 340 / 2e-116 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.015G129700 [exp] 338 / 2e-115 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.012G128100 [exp] 335 / 1e-114 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.005G163700 [exp] 144 / 2e-40 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 144 / 2e-40 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.014G126000 [exp] 140 / 6e-39 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1) Potri.005G163600 [exp] 139 / 1e-38 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 138 / 2e-38 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018314 [exp] 430 / 1e-151 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10013834 [exp] 332 / 6e-113 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10026548 [exp] 331 / 9e-113 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10031130 [exp] 324 / 6e-110 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10017138 [exp] 287 / 9e-98 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031709 [exp] 224 / 5e-72 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10017139 [exp] 134 / 3e-38 AT2G35150 149 / 1e-44 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10021370 [exp] 134 / 1e-36 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 132 / 1e-35 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 129 / 8e-35 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.015G122100.1 pacid=42775795 polypeptide=Potri.015G122100.1.p locus=Potri.015G122100 ID=Potri.015G122100.1.v4.1 annot-version=v4.1 ATGCATAAGAAGCTTTGGCAATGGCATGTTCTCTTTCTTTCTCTGTTTTGTTCGTCTTCTTTGGCCTCTTCACGGAGCCAAGATAACCTATTCAACCAAG CCAAGAACTATGAGGGCTCCTCTGATTTAGTAGACCTTCAGTACCACATGGGACCTGTTCTGGCTGGACCTGTCAACTTGTACATTATCTGGTATGGTCG ATGGAACCGAAACCACCAAGCTACTATTAGAGATTTCATCTATTCCCTCTCTTATTCATCTCCTTACCCTTCTGTTTCTGATTGGTGGAGGACAGTCCGT CTTTATACAGACCAAACAGGATCGAATGTCACTGGAAACATTGTCCTGTCAGGGGAGTTCTATGACTATAGATACTCTCATGGTCGTTATCTAAGTCGTT TGGCGATGCAATCCATCATCAAATCTGCAGTCACTGCCCATCCAAGAGCTTTACCTCTCAATCCTCACAATGGTCTCTACTTAGTGCTGACTTCTGGTGA TGTTCAAGTTCAAGATTTCTGTAGAGCAGTTTGTGGTTTTCACTACTTCACATTTCCGACCATAGTTGGTGTCACTGTGCCTTATGCCTGGGTTGGTTAT AGCGGAACTCAATGTCCTGGTATGTGTGCTTATCCATTTGCATGGCCTAAGTATTCAGGGAAGCCACCGCCAAGCACTAACGGAGGCAACAACATAATGA GAGCCCCAAACGGGGATCCTGGTGTAGACGGAATGATCAGTGTGCTTGCTCATGAGTTAGCAGAAGTGTCAAGTAATCCATTTATCAATGCATGGTATGC AGGAGATGACCCTACCTCGCCAACCGAGATAGCAGATTTATGCCTGGGCGTGTATGGGACTGGTGGGGGTGGAGGTTTTGTGGGGAAAGTGAATAAAGAT TCTTGGGGAGATGGGTACAATGTGAACGGAGTGAAAGGGAGGAGGTTCCTGGTGCAATGGGTATGGAACCCTGTGAAAAGGAGATGCTTTGGGCCCAATG CCATTGATTAG
AA sequence Show only first row Show all	>Potri.015G122100.1 pacid=42775795 polypeptide=Potri.015G122100.1.p locus=Potri.015G122100 ID=Potri.015G122100.1.v4.1 annot-version=v4.1 MHKKLWQWHVLFLSLFCSSSLASSRSQDNLFNQAKNYEGSSDLVDLQYHMGPVLAGPVNLYIIWYGRWNRNHQATIRDFIYSLSYSSPYPSVSDWWRTVR LYTDQTGSNVTGNIVLSGEFYDYRYSHGRYLSRLAMQSIIKSAVTAHPRALPLNPHNGLYLVLTSGDVQVQDFCRAVCGFHYFTFPTIVGVTVPYAWVGY SGTQCPGMCAYPFAWPKYSGKPPPSTNGGNNIMRAPNGDPGVDGMISVLAHELAEVSSNPFINAWYAGDDPTSPTEIADLCLGVYGTGGGGGFVGKVNKD SWGDGYNVNGVKGRRFLVQWVWNPVKRRCFGPNAID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Potri.015G122100 [exp]	0	1
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Potri.019G069300 [exp]	1.41	0.9121
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.001G081400 [exp]	3.87	0.8778	Pt-LBD3.2
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.007G001000 [exp]	4.24	0.9068
AT1G69080			Adenine nucleotide alpha hydro...		Potri.008G109000 [exp]	8.00	0.8782
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.003G149000 [exp]	8.30	0.8215	LBD3.1
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	8.66	0.8815
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.009G133100 [exp]	12.00	0.8602	Pt-ADF5.1
AT5G10150			Domain of unknown function (DU...		Potri.005G078300 [exp]	12.48	0.8663
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	13.63	0.8776	GASA4.2
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	17.32	0.8725

Compare expression of checked genes

Potri.015G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.