Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 115 / 1e-27 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 115 / 3e-27 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 105 / 4e-24 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 98 / 1e-21 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 94 / 5e-20 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039300 [exp] 115 / 2e-27 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.016G114200 [exp] 115 / 4e-27 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 113 / 2e-26 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 73 / 2e-14 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017137 [exp] 646 / 0 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 632 / 0 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 113 / 1e-26 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 110 / 2e-25 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 102 / 5e-23 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 100 / 5e-22 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 99 / 1e-21 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 97 / 2e-20 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 94 / 4e-20 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 79 / 4e-15 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF04488 [poplar] [flax] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [poplar] [flax] PF04572 [poplar] [flax] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Potri.015G122200.2 pacid=42775168 polypeptide=Potri.015G122200.2.p locus=Potri.015G122200 ID=Potri.015G122200.2.v4.1 annot-version=v4.1 ATGCTCCGCAACCGCCGCCGTCCCCGTTACAGTCCGCAAATATGCGCTGTTATCTCCGCTCTCCTCCTCCTCTTCTCAGTCTCTCTCCTCTACACTCGCC TCTCTTCCTCTCCCCAACAGAACACGGTTCCTTCCTCATTCAAGACCCAAGCTGACGAATTCTCAATAGCAATTGACAAGATCGATGAACAAGACACCAT TAAAGAAGAAGAAGGATATCACCAGAACGACAGCAATGAAGACCAAAACGACACCGAAGAAGAAGACACGAAAAGGCCCACGATTTCATCTTCTGGGTAT TACATGGATCATGTAACCGGTTCAATTAGAAGGTATTTGAATAAGAAATCGATAGAAGATTATGATTTTTCTGATTATAATTCCAATGGTTTTAGTCTAG GATTGAATGTAGAGGATTATAAAAGTAAGACCGCTTTTGGCAGTGATGATATAGTTGTCGATGAGGAAATTAAGAGGAAATTGAGTGAAGTTAAGAGTAT TGAAGATGCATTGCTGTTGAAAATAGGTAAAAAGGTGTCACCTTTAAGAGAAGGCTGGGGTGATTGGTTTGATAAAAAGAGTGATTTCTTGAGAAGGGAT AAAATGTTTAAGTCGAATTTGGAAGTTTTGAATCCGTTGACTAATCCTTTGTTGCAAGACCCTGATGGGGTTGGTGTTACTGGGTTAACTAGGGGTGATA AGGTTATGCAGAAGATGATTTTGAGTGAGTTTAAGAGGAACCCTTTTGGTGGGAAGAGGAGTTTGAGTGGTTTGGAGATGATCCACAATGCGGAAGTTGG AGGGAAGAGAGGTGAGGTTAAGAGAGTATTGAATGAGGATAATGGAAAAGTTTTGAAGGATGGTGATGGTAATATTGGTAAGGATGTGAGTTTTAAAGGA AATGGGATTGTATTGCATGAGGATCATGAAAGAAATTTGATGAAAGATAAGAAATTGAGTAATGGGTTAAATGGGGATGATGGGAGAAATTTGATGAAAG GTAAGAGCTTGAGTGATGTATCGAACGTGGAGGGAGTTAAAGATTATCAGGGAGATAAGAATTTGAGTGCAAATGAAAATGTAGTGGATAAGAGTAGTGG TGTTGGTGGTGAAACAAGGCAGATGATTGGAATGAAGACTAAGAGGTCCAAGGATCAGCAGAGGAAGCCTGAGGAGTCGAGTCATATACTTGCGGATGGG AAAAGATGGGGTTACTTTCCTGGTTTGCATCCTCATTTGTCATTTTCAGATTTCATGGCTTCATTTTTTAGGAATGGAAAGTGTGGTATGAGGGTATTCA TGGTGTGGAATTCGCCACCATGGATGCACAGTGTTAGACACCAAAGGGGACTTGAGAGTCTGCTCTCCCACCATAGAGATGCATGCGTTGTCATTTTCTC TGAGACAATTGATCTGGATTTTTTCAAGGACAGCTTTGTGAAAGATGGTTACAAGGTTGCTGTTGCCATGCCAAATCTCGACGAATTGCTGAAGGATACA CCCACCCATATTTTCACTTCAGTTTGGTTTCAGTGGCGAAAGACAAAGTTTTATCCAACTCATTATAGTGAACTGGTCCGCCTTGCTGCTCTCTACAAAT ATGGTGGTATCTATCTTGATTCTGATGTCATAGTTTTGAATTCATTGTCTTCACTTAATAATACTGTTGGCCTGGAGAATCCACGAGCTGGAAGTTCTTT GAATGGGGCTGTGATGGCATTTAGAAAGCACAGTCCATTTATAACCAAGTGTTTGAATGAGTTCTATATGACGTATGATGATAACCGTTTAAGATGGAAT GGAGCTGATCTTTTGACTAGAGTCGCAAGAAATTTTTTGAGTAAGGAGAATAAGTCCATTGATCAAAAGGAGTTGAAAGTGCAACCCTCATACATTTTCT TCCCCATTAGTTCACAGAATATTACAAGGTATTCTCCAAATTTTGAGTTCATTTCTTTACATGCTTACTCGTTTTTTAGCATTCAGATAAGCTTTTTTTT TGGCAATCACACGTGCACTAGTAAGCTGCTCAAAATGTTGCTTTTTATGAGTTCATTGGAATGCATTGCGGAAAACATAGGGTTCTGGTTCCAACTCCCT TTGCCCCACAACTTCGTGTATACATATTGGAAAACTAAAAGAAAAACTTAA
AA sequence Show only first row Show all	>Potri.015G122200.2 pacid=42775168 polypeptide=Potri.015G122200.2.p locus=Potri.015G122200 ID=Potri.015G122200.2.v4.1 annot-version=v4.1 MLRNRRRPRYSPQICAVISALLLLFSVSLLYTRLSSSPQQNTVPSSFKTQADEFSIAIDKIDEQDTIKEEEGYHQNDSNEDQNDTEEEDTKRPTISSSGY YMDHVTGSIRRYLNKKSIEDYDFSDYNSNGFSLGLNVEDYKSKTAFGSDDIVVDEEIKRKLSEVKSIEDALLLKIGKKVSPLREGWGDWFDKKSDFLRRD KMFKSNLEVLNPLTNPLLQDPDGVGVTGLTRGDKVMQKMILSEFKRNPFGGKRSLSGLEMIHNAEVGGKRGEVKRVLNEDNGKVLKDGDGNIGKDVSFKG NGIVLHEDHERNLMKDKKLSNGLNGDDGRNLMKGKSLSDVSNVEGVKDYQGDKNLSANENVVDKSSGVGGETRQMIGMKTKRSKDQQRKPEESSHILADG KRWGYFPGLHPHLSFSDFMASFFRNGKCGMRVFMVWNSPPWMHSVRHQRGLESLLSHHRDACVVIFSETIDLDFFKDSFVKDGYKVAVAMPNLDELLKDT PTHIFTSVWFQWRKTKFYPTHYSELVRLAALYKYGGIYLDSDVIVLNSLSSLNNTVGLENPRAGSSLNGAVMAFRKHSPFITKCLNEFYMTYDDNRLRWN GADLLTRVARNFLSKENKSIDQKELKVQPSYIFFPISSQNITRYSPNFEFISLHAYSFFSIQISFFFGNHTCTSKLLKMLLFMSSLECIAENIGFWFQLP LPHNFVYTYWKTKRKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	0	1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	1.41	0.8363
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	2.44	0.7907
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	4.89	0.7696
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	5.47	0.7815
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	5.47	0.7743
AT3G58050			unknown protein		Potri.016G060200 [exp]	6.48	0.7717
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	6.92	0.7810
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.002G165500 [exp]	11.40	0.7745
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	12.00	0.7313
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	13.49	0.7417

Compare expression of checked genes

Potri.015G122200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.