Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35140 212 / 2e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G01660 110 / 1e-24 unknown protein AT5G61910 109 / 5e-24 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G32910 108 / 5e-24 DCD (Development and Cell Death) domain protein (.1) AT3G11000 102 / 2e-22 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G42050 82 / 4e-16 DCD (Development and Cell Death) domain protein (.1) AT3G27090 71 / 8e-13 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074200 [exp] 107 / 2e-23 AT5G01660 488 / 2e-164 unknown protein Potri.001G136300 [exp] 103 / 2e-23 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.016G127600 [exp] 102 / 4e-22 AT5G01660 628 / 0.0 unknown protein Potri.013G029200 [exp] 96 / 7e-20 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1) Potri.005G042700 [exp] 93 / 4e-19 AT2G32910 198 / 3e-55 DCD (Development and Cell Death) domain protein (.1) Potri.005G043100 [exp] 93 / 4e-19 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 85 / 4e-17 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 83 / 2e-16 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.019G066100 [exp] 75 / 2e-14 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017137 [exp] 220 / 4e-58 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018316 [exp] 214 / 2e-57 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10012220 [exp] 108 / 2e-24 AT5G01660 224 / 1e-66 unknown protein Lus10004128 [exp] 110 / 4e-24 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10001728 [exp] 109 / 4e-24 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10018307 [exp] 102 / 1e-21 AT5G01660 276 / 3e-82 unknown protein Lus10032534 [exp] 94 / 1e-19 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10023059 [exp] 89 / 2e-18 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 88 / 3e-18 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 76 / 3e-14 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.015G122300.3 pacid=42776236 polypeptide=Potri.015G122300.3.p locus=Potri.015G122300 ID=Potri.015G122300.3.v4.1 annot-version=v4.1 ATGGAGTTTTATGAGCCTAATAATGTTCCTGGAAAATTTCCCGAGTTTGGTGCAATCTTTATGTCAAACAGGGCTACAAGGAAAGAATGTTTTAGAAGGA AATTATTAGGCCTTCCGTCAGGACAGGCTGACTTTGTGAAACAGGTTAAAGCTGGAATGGTTTTGTTTCTGTTTGAATTTGAGAGGAGAGAACTTCATGG TGTATTTCAAGCTTGCTCTGATGGCGCAATGAACATTGTACCCCACGCTTACAGTTCATCTGGAAAACAATTCCCTGCGCAGGTAAAATTCATCCAAATG TGGCAGTGTGAACCACTCTCTGAAAATGAATTTCGTGATGCAATCAGAGAAAATTATTTTTCACCATACAAGTTCAACTTCGGGTTGTCTGAAAGACAGG TTCAAAATCTTCTTTTATCGTTCAGTAAACGAAAGATAAAAGATAGGACACTTGAGAGGCAATTTACCCGAAGCAAGGTTGTAAGATCAGTTGAGTGCTC TGCAAAAGAAGCTAGAACTGCCACTGATGATGGCAGCTTCGTAATGATTGATAGCAAGAAAGATGAGCGAGATGCAGATGCTCCTTTTGGCTCTACCATC TCCACTGAGTACTTTGGGGACTCTATCAACAAGCACAGAAGAGAGTATGATAGGTACACAAGTCCTCCTTTCAGAAATGAACATAAAACTAACAGAGCGC TTATCTCAAAGGAGCAGTTTGTGGCCTCTCTGAGTGAAGTTGGAGGCTTCGCTGGGGATGCCCGGGTTTTGACAAGCAATATGGTAGGGAATGACCATGA TGTGGATATTGAGTCTAGGACGGATGTTTTAACTAATCATCGTGGGCATTCTTTTCCTACAAGCATAAGAAGTTCCGATTATGTCAACTTTGCGACAAGT TATGGGCTAGGACAGGAACTGATGGAGGACAATGGTTTTCAGCAGCCCTCAACTGAGCATACCGGTATGTTTCAGTCTAATCCAGGCTTGGCTGAGGATG CCCGGGCTGTGACAAGCAGTATGTTAGGGAATGAATCTAGGACGGATGCTTTAACTAATCATCATGGGCATTCTTTTCGTACAAGCAGAAGAAGTTCCGA TTATGTCAACTTTGCGATAAGTTATGGGCTAGGACAGGAGATGATGGAGGACAATGGTTTTCAGCAACCCTCAACTGAGCATACTGGTATGTTTCAGTCT AATCCACCTCATTGTTTTAGCAAGACCATCGCAGAAGAAAATTTGGTGGAGCTGCAAAACTCTCAATATTATAGACGGCCCATCTTGGAAGCAATTAAGG ATCAATTTCGACAATCTCCTACAGCACGTCACTTGATGGAGCCACATAATTCTGAGCTTTCTTTTTCAGCATTGGATGTTGATAGATTGCCTAGGTCAAA TGCTTTATATTCAACATCTTATGGAGATGGAGTTGGTGCATGCAATATTCCTTATGACCCAGATGTCCCCAGGCTTGGCAATAGGTGCTCGTCATCCCGT GGCCTTTCTAATTCAGTACCTGAATTCCCAGCATCTCACAGCAGTGTCTTTCCTTCATTTGATCAATCATTTCCTCCCCATGTGGAGCCTGAAGGTACAA GCAGTCGCCTAAACATCAATGCCTCTTTGTCCGACTACATTCTGTTGTCCAATGCCAGCCAACTTGAGCACCTGAACAGGTCTGGCATGCTTTTCCCAGG TGTTGATTATCCTGGTCATGTGGCTAGTAACTCGTCTATGAATGAAAATCCTGGGCACAATAGGAGCCCATCATCATTTGAGCTCTGTAATTCAGTTCCT CAATGCCCCCCTCACAACATCTTCCCTTCATTTGTAAATGAATCATTTCCATCATATATAGAGCCTAAAAGTACAAGCAAATGCCAAAACCTTAATTCTA TGTTATCCAGTGACAGTCCATTTTCATATCCTGGCCATCATGACCATGCAAACAGAACCAGCATGCTTTTCCCTGGTGCTGCTTATCCTGAAAATGTGCA AAGAAACTCCTCTGGGATTGAAAGGACAAGGGAGGACACTTCCTCTTGTTCCTGTAGCCTTAACAGGTCTTCCTCCTTTGTGTCTGATGTTAGGTATCCT GTCTCTTCACAAGAGGAATGTGATCATCAAATGTCACAGCATGAAAACAATGAAGCATTTGCTGCTTGTGTTCCTAGATTGAAACGCCATGAAAATGGTT TGATAAATCTAGATACACATGAAAACTCTCAGAGAATATACTCTGATCATCAGGAGAGAAAAAGTGTCTTTTCCCGCTTAGCTTTGCCTTCAGAAGTATG CAAACAAGATGAACATGATATTGATTCATCAATTGATGAAGTCATGACCATATTGCACCAGAGTCACGACCAATGGGTGAAGGAAAAAAAAATTAAGCAG CAGGTGAAAAGGCATGATGAGGTTACAAATCTCAAGAATAAGAAACAGATGACCGTGAATTCCCAGTTATTAACAGATCACTTGCCAAAGGTCTCAAAGG AGATTATCATGGATGATATTTCAGCCGGCAAGGGGGATGGTCTCCAAATGCCTGAAGTGATACCTTTTGTAGATTTCCAGCGTCGTAGAAAAGTGCAGAA GATTGAAAGCGATGCCATTACTGGGAGTACAGAAAACACTGGCTTATCAGGCCAGCAGCATAAAAGAAGAAAGTTGATCAGGCCAAAATTCAGTGGTAAT GGATCATCTGGCAATGTTATTGTCGGAAGTCAGGATGATGCAAGTAGGATGACTCAAAATGTTGAGTTACCAGATGTGACATTTCATGTTGGCCTTGAAG ACAAGAATATAGGTTTTCAAGGCCGTTCAGATCGTGAAGGAAACGAGAACGTGGCAAATTGTGTGGTGACCCCCAGCAATGCTAATGGAGACAGCAAAGA AGCATTACAGCATGTTGGTCTGGTTTCTGGTGAATACAAGAGTAATACAGAAAATAGCTTGACTTTGATGAATTCTGAGATTGATGGGATTGTCAAGTGT GGACTTGATCATGATGGAGGTAATGGAAATTTATCTGATAATGATAAAGCCGAGAATAGATCTTGTCACAATGGAGGTAATGAAAAGTTACCAAAAAATG CTGAAGTTGAGAATAGATCTTGCCCAACAACTGGTGAGAGGGCCATAGATATTACGGTGGGCAGCGGAATGGATTATAACTGTGGATCGGAAAAGGCATT CAAAGAAGGTGGAAATGTTGAAGAGAGTAAACAGAAGCTATTTTTGCAATCTGTTGGGGAACAGTGCAAAGCATCTATTGAAACTGTCAGTTACTCCAAT ATGAAAGAGTCTCCAGAATTATGCGAAGAATATGACAAACATGGAGAGGTGATAGCAGCAGCCGCAGGCAAAGACTGTATAGTGGTTGTTGAGCGAGAAG ATAGTGGAGATGGAAATCGTGAAAGTCTCAGCCATTAA
AA sequence Show only first row Show all	>Potri.015G122300.3 pacid=42776236 polypeptide=Potri.015G122300.3.p locus=Potri.015G122300 ID=Potri.015G122300.3.v4.1 annot-version=v4.1 MEFYEPNNVPGKFPEFGAIFMSNRATRKECFRRKLLGLPSGQADFVKQVKAGMVLFLFEFERRELHGVFQACSDGAMNIVPHAYSSSGKQFPAQVKFIQM WQCEPLSENEFRDAIRENYFSPYKFNFGLSERQVQNLLLSFSKRKIKDRTLERQFTRSKVVRSVECSAKEARTATDDGSFVMIDSKKDERDADAPFGSTI STEYFGDSINKHRREYDRYTSPPFRNEHKTNRALISKEQFVASLSEVGGFAGDARVLTSNMVGNDHDVDIESRTDVLTNHRGHSFPTSIRSSDYVNFATS YGLGQELMEDNGFQQPSTEHTGMFQSNPGLAEDARAVTSSMLGNESRTDALTNHHGHSFRTSRRSSDYVNFAISYGLGQEMMEDNGFQQPSTEHTGMFQS NPPHCFSKTIAEENLVELQNSQYYRRPILEAIKDQFRQSPTARHLMEPHNSELSFSALDVDRLPRSNALYSTSYGDGVGACNIPYDPDVPRLGNRCSSSR GLSNSVPEFPASHSSVFPSFDQSFPPHVEPEGTSSRLNINASLSDYILLSNASQLEHLNRSGMLFPGVDYPGHVASNSSMNENPGHNRSPSSFELCNSVP QCPPHNIFPSFVNESFPSYIEPKSTSKCQNLNSMLSSDSPFSYPGHHDHANRTSMLFPGAAYPENVQRNSSGIERTREDTSSCSCSLNRSSSFVSDVRYP VSSQEECDHQMSQHENNEAFAACVPRLKRHENGLINLDTHENSQRIYSDHQERKSVFSRLALPSEVCKQDEHDIDSSIDEVMTILHQSHDQWVKEKKIKQ QVKRHDEVTNLKNKKQMTVNSQLLTDHLPKVSKEIIMDDISAGKGDGLQMPEVIPFVDFQRRRKVQKIESDAITGSTENTGLSGQQHKRRKLIRPKFSGN GSSGNVIVGSQDDASRMTQNVELPDVTFHVGLEDKNIGFQGRSDREGNENVANCVVTPSNANGDSKEALQHVGLVSGEYKSNTENSLTLMNSEIDGIVKC GLDHDGGNGNLSDNDKAENRSCHNGGNEKLPKNAEVENRSCPTTGERAIDITVGSGMDYNCGSEKAFKEGGNVEESKQKLFLQSVGEQCKASIETVSYSN MKESPELCEEYDKHGEVIAAAAGKDCIVVVEREDSGDGNRESLSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35140			DCD (Development and Cell Deat...		Potri.015G122300 [exp]	0	1
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	1.00	0.8787
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	3.46	0.8449
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.006G256200 [exp]	6.70	0.8274
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	7.00	0.8324
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	9.48	0.8122
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	16.85	0.8457
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.008G077300 [exp]	18.11	0.7739
AT2G23790			Protein of unknown function (D...		Potri.007G031400 [exp]	20.97	0.8429
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	21.44	0.8258
AT5G46220			Protein of unknown function (D...		Potri.018G107800 [exp]	23.43	0.7578

Compare expression of checked genes

Potri.015G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.