Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16470 456 / 1e-165 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 453 / 2e-164 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G66140 168 / 1e-51 PAD2 proteasome alpha subunit D2 (.1) AT3G51260 164 / 5e-50 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT1G53850 156 / 3e-47 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 154 / 2e-46 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 154 / 3e-46 PAC1 20S proteasome alpha subunit C1 (.1) AT5G35590 153 / 5e-46 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 149 / 2e-44 PAA2 20S proteasome subunit PAA2 (.1.2) AT5G42790 146 / 5e-43 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123550 [exp] 480 / 4e-175 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.004G174200 [exp] 175 / 1e-54 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.009G133800 [exp] 174 / 3e-54 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.006G110800 [exp] 160 / 1e-48 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.003G072500 [exp] 159 / 2e-48 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.001G162900 [exp] 158 / 4e-48 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.006G140400 [exp] 156 / 3e-47 AT2G05840 463 / 7e-168 20S proteasome subunit PAA2 (.1.2) Potri.016G015400 [exp] 154 / 2e-46 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.006G008800 [exp] 153 / 5e-46 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017135 [exp] 466 / 1e-169 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 463 / 3e-168 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10018318 [exp] 437 / 5e-150 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041890 [exp] 173 / 2e-53 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10028437 [exp] 167 / 1e-51 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10027669 [exp] 158 / 7e-48 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10042145 [exp] 157 / 3e-47 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 150 / 1e-45 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10037454 [exp] 155 / 8e-44 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 155 / 1e-43 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00227 [poplar] [flax] Proteasome Proteasome subunit CL0052 [poplar] [flax] NTN PF10584 [poplar] [flax] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Potri.015G122400.3 pacid=42775535 polypeptide=Potri.015G122400.3.p locus=Potri.015G122400 ID=Potri.015G122400.3.v4.1 annot-version=v4.1 ATGGGTGATAGCCAGTACTCCTTTTCTCTCACTACTTTCAGTCCTACAGGAAAGCTAGTACAGATCGAGCACGCATTGACTGCCGTTGGATCAGGCCAAA CTTCTCTCGGAATCAAAGCTGCAAACGGTGTTGTTATTGCAACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAATCATCTGTTCAGAAAATACAGAA TCTGACACCTAATATTGGAGTTGTCTACAGTGGAATGGGTCCTGACTTTCGAGTTTTAGTTCGGAAAAGTAGGAAGCAGGCAGAACAATATCATAGATTG TACAAGGAACCAATTCCTGTCACACAACTTGTGAGGGAAACTGCCGCTGTCATGCAAGAGTTTACTCAATCTGGAGGTGTAAGGCCTTTTGGAGTATCTT TGCTAGTTGCTGGTTTTGATGACAAAGGTCCACAGCTGTACCAGGTTGATCCCTCAGGTTCCTACTTCTCATGGAAAGCCTCAGCAATGGGAAAAAATGT TTCAAATGCAAAAACATTTCTTGAGAAGAGATACACTGATGATATGGAGCTTGATGATGCTGTACACACTGCTATCTTGACACTGAAAGAGGGATTTGAA GGACAGATCTCTGGGAAAAATATTGAAATTGGGATAATTGGTGCTGACAAGCAATTCAGGGTACTAACTCCAGCTGAAATTGATGATTATCTGGCTGAAG TGGAATAG
AA sequence Show only first row Show all	>Potri.015G122400.3 pacid=42775535 polypeptide=Potri.015G122400.3.p locus=Potri.015G122400 ID=Potri.015G122400.3.v4.1 annot-version=v4.1 MGDSQYSFSLTTFSPTGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDESSVQKIQNLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRL YKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGFDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFE GQISGKNIEIGIIGADKQFRVLTPAEIDDYLAEVE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	0	1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	1.00	0.9511	PBF1.2
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	3.16	0.9506	APFI.1
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.001G088200 [exp]	3.46	0.9376
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	3.87	0.9399
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.002G127900 [exp]	4.79	0.9107
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.008G144100 [exp]	5.00	0.9062	A1.3
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.010G192200 [exp]	5.74	0.9025	Pt-RPN8.1
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	6.00	0.9324	Pt-PAE1.1
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	6.70	0.9348
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.002G255900 [exp]	6.92	0.9261

Compare expression of checked genes

Potri.015G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.