Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35120 224 / 1e-76 Single hybrid motif superfamily protein (.1) AT1G32470 184 / 2e-60 Single hybrid motif superfamily protein (.1) AT2G35370 179 / 2e-58 GDCH glycine decarboxylase complex H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123700 [exp] 264 / 4e-92 AT2G35120 217 / 2e-73 Single hybrid motif superfamily protein (.1) Potri.001G144800 [exp] 180 / 1e-58 AT1G32470 255 / 3e-88 Single hybrid motif superfamily protein (.1) Potri.003G089300 [exp] 180 / 1e-58 AT1G32470 260 / 3e-90 Single hybrid motif superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018319 [exp] 244 / 4e-84 AT2G35120 244 / 2e-84 Single hybrid motif superfamily protein (.1) Lus10030979 [exp] 172 / 1e-55 AT1G32470 254 / 4e-88 Single hybrid motif superfamily protein (.1) Lus10035374 [exp] 172 / 1e-55 AT1G32470 254 / 6e-88 Single hybrid motif superfamily protein (.1) Lus10017133 [exp] 157 / 2e-50 AT2G35120 162 / 1e-52 Single hybrid motif superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [poplar] [flax] Hybrid PF01597 [poplar] [flax] GCV_H Glycine cleavage H-protein
Representative CDS sequence Show only first row Show all	>Potri.015G122500.1 pacid=42775598 polypeptide=Potri.015G122500.1.p locus=Potri.015G122500 ID=Potri.015G122500.1.v4.1 annot-version=v4.1 ATGGCTTCAAGATTGTTATGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTTTCTCATAGAGGGTTTGCTTCTGTTATAAAGGACTTGAAGTATG CTGAAAGTCATGAATGGGTGAAGGTTGATGGTAATACTGCTACTGTTGGTATAACGGATCATGCTCAGGATCATTTAGGTGATGTAGTGTATGTTGAATT ACCAGAAGTGGGTGCTGCTGTAAATCAGGGTTCTGGATTTGGTGCAGTTGAAAGTGTCAAGGCTACCAGTGATGTTTATTCTCCTGTTTCGGGAAATGTG GTTGAAGTTAATGAAGAACTGAGCAGCTCTCCTGGTTTGGTCAATTCAAGCCCCTACGAAAAGGGATGGATTATGAAGGTTGAAATTAAAGATGCCAGTG AACTAGAGACCTTGAAGAACTCAGATGACTATGCTAAGTTCTGTGAAGAAGAAGATGCAAAGCATTGA
AA sequence Show only first row Show all	>Potri.015G122500.1 pacid=42775598 polypeptide=Potri.015G122500.1.p locus=Potri.015G122500 ID=Potri.015G122500.1.v4.1 annot-version=v4.1 MASRLLWASRAASYLRISVSHRGFASVIKDLKYAESHEWVKVDGNTATVGITDHAQDHLGDVVYVELPEVGAAVNQGSGFGAVESVKATSDVYSPVSGNV VEVNEELSSSPGLVNSSPYEKGWIMKVEIKDASELETLKNSDDYAKFCEEEDAKH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35120			Single hybrid motif superfamil...		Potri.015G122500 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	2.00	0.9609
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	3.16	0.9541
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	5.19	0.9515
AT1G68680			unknown protein		Potri.011G024500 [exp]	6.32	0.9382
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.009G067100 [exp]	6.63	0.9469
AT3G48380			Peptidase C78, ubiquitin fold ...		Potri.015G088200 [exp]	8.71	0.9058
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	8.94	0.9454	UBP20.2
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	9.94	0.9345	ACLB.2
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	10.39	0.9420
AT3G12955			SAUR-like auxin-responsive pro...		Potri.001G458000 [exp]	11.83	0.9400	SAUR4

Compare expression of checked genes

Potri.015G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.