Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18820 820 / 0 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT2G28000 702 / 0 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G55490 499 / 4e-171 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 498 / 8e-171 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 489 / 2e-167 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G26230 423 / 3e-141 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G23990 394 / 1e-130 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 389 / 1e-128 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 379 / 8e-125 HSP60-3A heat shock protein 60-3A (.1) AT3G18190 54 / 3e-07 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123600 [exp] 842 / 0 AT5G18820 641 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 718 / 0 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 714 / 0 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.015G123200 [exp] 690 / 0 AT5G18820 552 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 494 / 2e-169 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 492 / 2e-168 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 436 / 8e-147 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.003G173900 [exp] 413 / 5e-138 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 411 / 3e-137 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038352 [exp] 857 / 0 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10036216 [exp] 855 / 0 AT5G18820 771 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 689 / 0 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10041329 [exp] 608 / 0 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10013404 [exp] 492 / 2e-168 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 492 / 1e-167 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10030917 [exp] 415 / 5e-138 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10022832 [exp] 410 / 1e-136 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 407 / 9e-136 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 405 / 5e-135 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.015G122800.1 pacid=42775922 polypeptide=Potri.015G122800.1.p locus=Potri.015G122800 ID=Potri.015G122800.1.v4.1 annot-version=v4.1 ATGTCCTTCTCCTTCTCTATCTCCGAACCTCTTGCCTTCCCTCAACAACCCCTATTCTCTAGTCTTGGTGGGAACAAAAGGGCAAGTGGGATATGGAGAA ACCATCAAGTAGTGAATAAATTAGTGGTAAGAGCAGGTCCAAAGAAGATATCTTTTGGTAAAGATTGTAGAGAAGCCTTGCAGGCAGGAATTGATAAGCT TGCTGATGCTGTTTCTCTCACTTTAGGGCCTCAAGGTCGTAATGTTGTTCTTTCGGATTCAAAGACGCTAAAAGTAGTAAATGATGGTGTTACAATAGCT CGTGCAATAGAGCTTCCGGATTCAATGGAGAATATTGGAGCAATTTTAATCCAAGAGGTTGCTAGTAAAATGAATGATATGGCTGGAGATGGCACTACTA CTGCTATTATTTTGGCTCGTGAAATGATCAAAACAGGGATGTTGGCAGTCACTTTTGGGGCTAACCCTGTTTTTGTAAAGAAAGGAATGGATATGGCTGT CAAAGAGTTGGTCAAAGTGTTGAAGAAGAATAGTTTTCCAGTAAAAGGGAAGGATGATATAAAAGCGGTCGCTTCAATTTCTGCTGGAAATGATGAATTT GTTGGGAACCTAATTGCTGAAACTATAGAGAAGATTGGCTCTGATGGAGTTATCTCTCTTGAATCATCTTCAACCTCTGATACATTTGTGATAATAGAAG AAGGAATGAAGTTTGACAAGGGTTATATGTCACCCCAATTCATCACAAACCAGGAAAAATCTTTGGTGGAGTTTGACAAGGCCAAAGTCCTTGTAACGGA TCAGAAGATTGCAAATGTCCAAGAAATAGTTCCTGTGTTGGAGAAGACTACCCAACTCAGTGTCCCATTGTTAATCATTGCTGAGGATATCTCAAAGCCA GTTTTGGAAACACTAGTGTTGAACAAAATGAAAGGTTTGCTCAATGTTGCTGTTGTCAAATGCCCTGGATTTGGAGATCGAAAGAAAGCATTGTTGCAAG ACATTGCTCTTATGACAGGTGCTGATTTTCTCTCTGGTGATTTTGGGCTGACACTCGGAAGTGTAACCTCGGATCAACTTGGCATTGCACGAAAAGTTAC CATAACAAGTAATTCAACAACCATAGTTGCTGACTCAGCTACCAAAGCTGAAATTCAGGCAAGAATTCTTCAGATAAAAAAGGACCTCGCTGAAACAGAT AATGCTGCTCTTTCAAGAAAGCTCTCAGAGAGAATTGCTAAATTATCTGGTGGTGTGGCTGTAATCAAGGTAGGAGCACACACGGAGACAGAACTTGAAG ATAGGAAACTCAGAATTGAAGATGCAAAGAATGCTACATTTGCTGCCATGGATGAAGGGATAGTACCTGGTGGTGGTGCAACATATGTACATCTCTCGGA GCAGATCTCCTCAATAAAAAATTCCATGAAAGATGAAAATGAGAAGATTGGTGCTGATATTGTTGCAAAGGCACTTCTTGCACCTGCAAAAACAATTGCA ACTAATGCAGGGGTTGATGGAGCAGTTGTGGTGGAGAATATTCGATCTTGTGACTGGAGAACCGGTTACAATGCAATGACTGGTAGATATGAAGATCTTC TCAATGCAGGGGTGGTAGATCCTTGTAGAGTTTCTAGGTGTGCACTTCAAAGTGCTGTCTCAATTGCTGGGATAGTTCTAACAACTCAAGCTGTGCTGGT TGAAAAAATAAAGAAGCCCAAGCCCGCTGTCCCTTATGTTCCTGGAATTACACCTTGA
AA sequence Show only first row Show all	>Potri.015G122800.1 pacid=42775922 polypeptide=Potri.015G122800.1.p locus=Potri.015G122800 ID=Potri.015G122800.1.v4.1 annot-version=v4.1 MSFSFSISEPLAFPQQPLFSSLGGNKRASGIWRNHQVVNKLVVRAGPKKISFGKDCREALQAGIDKLADAVSLTLGPQGRNVVLSDSKTLKVVNDGVTIA RAIELPDSMENIGAILIQEVASKMNDMAGDGTTTAIILAREMIKTGMLAVTFGANPVFVKKGMDMAVKELVKVLKKNSFPVKGKDDIKAVASISAGNDEF VGNLIAETIEKIGSDGVISLESSSTSDTFVIIEEGMKFDKGYMSPQFITNQEKSLVEFDKAKVLVTDQKIANVQEIVPVLEKTTQLSVPLLIIAEDISKP VLETLVLNKMKGLLNVAVVKCPGFGDRKKALLQDIALMTGADFLSGDFGLTLGSVTSDQLGIARKVTITSNSTTIVADSATKAEIQARILQIKKDLAETD NAALSRKLSERIAKLSGGVAVIKVGAHTETELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLSEQISSIKNSMKDENEKIGADIVAKALLAPAKTIA TNAGVDGAVVVENIRSCDWRTGYNAMTGRYEDLLNAGVVDPCRVSRCALQSAVSIAGIVLTTQAVLVEKIKKPKPAVPYVPGITP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G122800 [exp]	0	1
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	2.00	0.8737
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	7.61	0.8506
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	7.93	0.7462
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.003G015000 [exp]	18.16	0.7692
AT3G19940			Major facilitator superfamily ...		Potri.005G090700 [exp]	34.20	0.7543
AT1G69430			unknown protein		Potri.006G159000 [exp]	34.64	0.8026
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	40.47	0.7737
AT2G12646			PLATZ transcription factor fam...		Potri.006G060500 [exp]	57.06	0.7458
AT5G01700			Protein phosphatase 2C family ...		Potri.016G127900 [exp]	57.23	0.7410
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	59.86	0.7552

Compare expression of checked genes

Potri.015G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.