Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18820 552 / 0 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT2G28000 446 / 2e-154 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G55490 331 / 2e-109 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 327 / 7e-108 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 327 / 8e-108 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G26230 280 / 7e-90 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G23990 254 / 1e-79 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 254 / 2e-79 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 247 / 3e-77 HSP60-3A heat shock protein 60-3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122800 [exp] 691 / 0 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.015G123600 [exp] 690 / 0 AT5G18820 641 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 455 / 7e-158 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 455 / 7e-158 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.001G002500 [exp] 330 / 1e-108 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 328 / 5e-108 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 304 / 7e-99 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.003G173900 [exp] 270 / 6e-86 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 270 / 8e-86 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036216 [exp] 565 / 0 AT5G18820 771 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10038352 [exp] 561 / 0 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 427 / 7e-147 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10041329 [exp] 425 / 1e-146 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10013404 [exp] 332 / 1e-109 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 332 / 5e-109 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10030917 [exp] 275 / 3e-87 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10022832 [exp] 268 / 4e-85 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 266 / 2e-84 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 264 / 2e-83 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.015G123200.1 pacid=42776622 polypeptide=Potri.015G123250.1.p locus=Potri.015G123200 ID=Potri.015G123200.1.v4.1 annot-version=v4.1 ATGAAGTTTGACAAGGGTTATATGTCGCCCCAATTCATCACAAACCAGGAAAAATCTTTGGTGGAGTTTGACAAGGCCAAAGTCCTAGTAACGGATCAGA AGATTGCAAATGTCCAAGAAATAGTTCCTGTGTTGGAGAAGACTACCCAACTCAGTGTCCCATTGTTAATCATTGCTGAGGATATCTCAAAGCTGGTTTT GGAAACACTAGTGGTGAACAAAATGAAAGGTTTGCTCAATGTTGCTGTTGTCAAATGCCCTGGATTTGGAGATCGAAAGAAAGCATTGTTGCAAGACATT GCTCTTATGACAGGTGCTGATTTTCTCTCTGGTGATTTTGGGCTGACACTCGGAAGTGTAACCTCGGATCAACTTGGCATTGCACGAAAAGTTACCATAA CAAGTAATTCAACAACCATAGTTGCTGACTCAGCTACCAAAGCTGAAATTCAGGCAAGAATTCTTCAGATAACAAAGGACCTCGCTGAAACAGATAATGC TGCCCTTTCAAGAAAGCTCTCAGAGAGAATTGCTAAATTATCTGGTGGTGTGGCTGTAATCAAGGTAGGAGCACACACGGAGACAGAACTTGAAGATAGG AAACTCAGAATTGAAGATGCAAAGAATGCTACATTTGCTGCCATGGATGAAGGGATAGTACCTGGTGGTGGTGCAACATATGTACATCTCTCGGAGCAGA TCTCCTCAATAAAAAATTCCATGAAAGATGAAATTGAGAAGATTGGTGCTGATATTGTTGCAAAGGCACTTCTTGCACCTGCAAAAACAATTGCAACTAA TGCAGGGGTTGATGGAGCAGTTGTGGTGGAGAATATTCGATCTTGTGACTGGAGAACTGGTTACAATGCAATGACTGGTAGATATGAAGATCTTCTCAAT GCAGGGGTGGTAGATCCTTGTAGAGTTTCTAGGTGTGCACTTCACAGTGCTGTCTCAATTGCTGGGATAGTTCTAACAACTCAAGCTGTGCTGGTTGAAA AAATAAAGAAGCCCAAGCCCGCTGTCCCTTGTGTTCCTGGAATTACACCTTGA
AA sequence Show only first row Show all	>Potri.015G123200.1 pacid=42776622 polypeptide=Potri.015G123250.1.p locus=Potri.015G123200 ID=Potri.015G123200.1.v4.1 annot-version=v4.1 MKFDKGYMSPQFITNQEKSLVEFDKAKVLVTDQKIANVQEIVPVLEKTTQLSVPLLIIAEDISKLVLETLVVNKMKGLLNVAVVKCPGFGDRKKALLQDI ALMTGADFLSGDFGLTLGSVTSDQLGIARKVTITSNSTTIVADSATKAEIQARILQITKDLAETDNAALSRKLSERIAKLSGGVAVIKVGAHTETELEDR KLRIEDAKNATFAAMDEGIVPGGGATYVHLSEQISSIKNSMKDEIEKIGADIVAKALLAPAKTIATNAGVDGAVVVENIRSCDWRTGYNAMTGRYEDLLN AGVVDPCRVSRCALHSAVSIAGIVLTTQAVLVEKIKKPKPAVPCVPGITP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	0	1
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	1.41	0.9610
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G122800 [exp]	2.00	0.8737
AT2G20320			DENN (AEX-3) domain-containing...		Potri.002G255500 [exp]	13.60	0.8182
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	15.55	0.8297
					Potri.011G130901 [exp]	17.17	0.8052
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	21.67	0.8469
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G050400 [exp]	26.26	0.8210
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	26.55	0.8596
AT4G14368			Regulator of chromosome conden...		Potri.008G167500 [exp]	32.40	0.8004
AT4G22190			unknown protein		Potri.006G283300 [exp]	32.61	0.8559

Compare expression of checked genes

Potri.015G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.