Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 709 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 636 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 468 / 2e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 466 / 9e-147 Leucine-rich repeat protein kinase family protein (.1) AT5G56040 424 / 4e-131 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65700 422 / 4e-131 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 427 / 8e-131 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 422 / 6e-130 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17750 420 / 1e-129 AtPEPR2 PEP1 receptor 2 (.1) AT5G44700 419 / 6e-128 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123700 [exp] 1474 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 1442 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 1431 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 1360 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 1341 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 1301 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 1217 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 1043 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 1043 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 748 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 725 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 715 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 702 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 656 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 632 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 617 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 608 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 584 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10011761 [exp] 437 / 3e-137 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.015G123400.2 pacid=42775737 polypeptide=Potri.015G123400.2.p locus=Potri.015G123400 ID=Potri.015G123400.2.v4.1 annot-version=v4.1 ATGGCTTCCCACATCTCCCTCTTTTCCACACCTTTTTTGGTTTTTTCCTTTCTTGCTTGTGCTTCCTTCTTTGCTTCTTTTGCTTACTCGGCTAGTACTG GAGCTGCTGAAGTAGCAAATGGAAGGACGGAAGCGGAAGCTCTTCTAGAATGGAAAGTCAGTCTTGACAACCAAAGCCAGTCTCTCCTGTCTTCATGGGC TGGAGACAGCCCTTGCAACTGGTTCGGAATCAGTTGCGACCAGTCTGGTAGTGTCATCAACATAAGTCTGCCCGATTCTAGTTTGAGAGGTACGCTTAAT AGACTCAGATTCTCTTCCTTTCCTAACTTGACTGTGCTTAACCTTCCCAACAACTCCCTTTATGGTTATGTTCCTTCACATATAGGTAACCTTTCTAACC TCTCCATCCTTAACTTGGCTTTCAATAGCATTTCTGGCAACATTCCACCAGAAATTGGAAATTTAGTATCTCTCACAATTTTAGCTTTGTCATCTAATAA ACTAACGGGTACAATACCAGCATCTTTAGAAAATTTAAAAAACTTATCTAAACTTTACCTTTGGAATAATAATCTTTTTGGTTCCATTACTTTTATTGGA AACCTGACGAGATCTCTCACCATTTTAGTTTTGTCATTTAATAAACTAACTGGTACAATACCAGCATCTTTACAAAATTTAAAAAGCTTATCTAAACTTA ACCTTTGTAATAATAATCTTTCTGGTTCCATTACTTTTATTGAAAACATAACGAGATCTCTCACCAATTTAGATTTATCATTCAATAAATTAACTGGTAC AATACCAGCATCTTTAGAAAATTTAAGAAGCTTATATCAACTTGACCTTCAACATAACAATTTTTTTGGTCCCATTATTTTTATCCAAAACCTGACGAGA TCTCTCACTATTTTAGATTTGTCATTTAATAATTTAACTGGTACAATACCTGCATCTCTAGGCAATTTAAGAAGCTTATCTCAACTTTACTTCCAAGATA ACAGTCTTTTTGGTCCGATTCCTCCAGAAATGAACAATCTTACACATTTGTATTCGTTAGAAATATATTCTAATAGATTGTCTGGTAATCTACCACGAGA TGTGTGCCTTGGTGGATTACTTTCATATTTTTCTGCGTCTGAAAATTATTTCACTGGACCTATCCCAAAAAGCTTGAGAAATTGCAGCAGCTTGTTGAGA CTCAGACTTGAGAGAAACCAACTTAGCGGAAACATATCTGAAGCTTTTGGCACACATCCCCATCTGTACTACATGGGTTTGAGTGATAATGAATTGCATG GTGAACTTTCATTGAAATGGGAGCAGTTTAACAATCTGGCAGCCTTCAAGATTTCTGGAAACAAGATTTCTGGAGAGATACCCGCAGCTCTTGGAAAGGC AACTCATCTACAAGCTCTTGACCTGTCGTCAAATCAACTAGTTGGGAGAATTCCCAAAGAATTGCGAAATTTGAAGTTGATTGAACTTGCACTAAACGAT AACAAGCTTTCAGGTGATATTCCTTTCGATGTGGCATCGCTATCTGATCTGGAAAGGCTTGGCCTGGCCGCGAACAATTTTAGTGCCTCAATTCTTACGC AGCTTGGCAAGTGCTCAAAACTGGTATTCTTGAATATGAGCAAGAATAGATTCACAGGGATTATTCCTGCTGAGATGGGGTCTTTACAGTCTCTTCAAAA TCTTGATCTCAGTTGGAATTCCCTCATGGGAGGTATAGCACCGGAGCTTGGACAGCTGCAGCAGCTAGAGTTTCTGAACCTCTCCCATAATATGCTGTCT GGTCTCATTCCAGCCAGTTTTAGTAGACTGCAAGGCCTCACTAAAGTGGATGTATCCTATAACAAGCTAGAGGGTCCCATTTCTGACATCAAAGCCTTTC GCGAGGCACCATTTGAAGCAATTCGCAACAACACCAACCTGTGTGGCAATGCAACTGGTTTGGAGGCTTGTTCTGCTCTCATGAAAAACAAAACTGTGCA CAAGAAGGGCCCCAAAGTTGTCTTTTTGACAGTATTTTCTCTGCTGGGTAGTTTGTTGGGCCTGATTGTAGGTTTTCTTATCTTTTTCCAAAGCAGAAGA AAGAAAAGGTTAGTGGAAACACCACAAAGAGATGTTACCGCGAGATGGTGCCCTGGTGGGGATCTGCGCTACGAGGACATCATTGAGGCTACTGAGGAAT TCGACTCCAAATATTGCATTGGTACTGGAGGGTATGGAGTTGTATACAAAGCTGTGCTTCCATCAGAACAAGTCCTTGCCGTGAAGAAATTCCACCAAAC ACCAGAAGTTGAGATGAGCAGCTTGAAAGCTTTTAGAAGCGAGATTGATGTCTTAATGGGTATACGGCATCGAAATATTGTGAAGCTGTATGGTTTCTGC TCCCATGCCAAACACTCATTTTTGGTATATGAATTTGTGGAAAGGGGAAGTTTAAGAAAGGTACTGAACGAGGAGGAACAATCAGCAAAGATGGATTGGG ATAAAAGGATGAATCTTATCAAAGGCGTAGCCAATGCTTTATCCTACATGCACCATGACTGCTCCCCTCCGATTATTCATAGAGACATTTCCAGCAACAA TGTTCTTTTGGATTCAGAATATGAGGCTCATGTCTCTGACTTCGGCACAGCCAGGCTCTTAATGCCTGACTCGTCCAATTGGACATCATTTGCTGGCACC TTTGGGTACACAGCTCCAGAGTTGGCATACACAATGAAAGTGGATGAGAAGTGTGATGTGTATAGCTTTGGAGTATTAACATTGGAAGTAATGATGGGAA AGCATCCTGGCGATTTCATCTCATCTCTGATGTTATCTGCCTCCACCTCCTCATCATCACCAATTGGTCACAATACAGTCTTGAAGGATGTCTTAGACCA GCGCCTCCCACCTCCTGAAAACGAGCTTGCGGACGGTGTGGCACATGTTGCAAAACTGGCGTTTGCTTGCTTGCAGACCGATCCTCACTATCGGCCAACA ATGCGACAGGTTTCTACAGAGCTTACAACTCGATGGCCTCCATTGCCAAAGCTATTCTCCACGATGGAATTGGAAGATATAATGGTTCACAGAAATGATA TTGGCTGA
AA sequence Show only first row Show all	>Potri.015G123400.2 pacid=42775737 polypeptide=Potri.015G123400.2.p locus=Potri.015G123400 ID=Potri.015G123400.2.v4.1 annot-version=v4.1 MASHISLFSTPFLVFSFLACASFFASFAYSASTGAAEVANGRTEAEALLEWKVSLDNQSQSLLSSWAGDSPCNWFGISCDQSGSVINISLPDSSLRGTLN RLRFSSFPNLTVLNLPNNSLYGYVPSHIGNLSNLSILNLAFNSISGNIPPEIGNLVSLTILALSSNKLTGTIPASLENLKNLSKLYLWNNNLFGSITFIG NLTRSLTILVLSFNKLTGTIPASLQNLKSLSKLNLCNNNLSGSITFIENITRSLTNLDLSFNKLTGTIPASLENLRSLYQLDLQHNNFFGPIIFIQNLTR SLTILDLSFNNLTGTIPASLGNLRSLSQLYFQDNSLFGPIPPEMNNLTHLYSLEIYSNRLSGNLPRDVCLGGLLSYFSASENYFTGPIPKSLRNCSSLLR LRLERNQLSGNISEAFGTHPHLYYMGLSDNELHGELSLKWEQFNNLAAFKISGNKISGEIPAALGKATHLQALDLSSNQLVGRIPKELRNLKLIELALND NKLSGDIPFDVASLSDLERLGLAANNFSASILTQLGKCSKLVFLNMSKNRFTGIIPAEMGSLQSLQNLDLSWNSLMGGIAPELGQLQQLEFLNLSHNMLS GLIPASFSRLQGLTKVDVSYNKLEGPISDIKAFREAPFEAIRNNTNLCGNATGLEACSALMKNKTVHKKGPKVVFLTVFSLLGSLLGLIVGFLIFFQSRR KKRLVETPQRDVTARWCPGGDLRYEDIIEATEEFDSKYCIGTGGYGVVYKAVLPSEQVLAVKKFHQTPEVEMSSLKAFRSEIDVLMGIRHRNIVKLYGFC SHAKHSFLVYEFVERGSLRKVLNEEEQSAKMDWDKRMNLIKGVANALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLMPDSSNWTSFAGT FGYTAPELAYTMKVDEKCDVYSFGVLTLEVMMGKHPGDFISSLMLSASTSSSSPIGHNTVLKDVLDQRLPPPENELADGVAHVAKLAFACLQTDPHYRPT MRQVSTELTTRWPPLPKLFSTMELEDIMVHRNDIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123400 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G122900 [exp]	1.00	0.9532
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119900 [exp]	1.41	0.9308
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145522 [exp]	7.48	0.8998
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123100 [exp]	10.19	0.8405
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294100 [exp]	11.18	0.8961
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	11.40	0.8629
					Potri.012G120768 [exp]	12.68	0.8892
					Potri.012G120952 [exp]	14.14	0.8891
					Potri.012G120860 [exp]	17.86	0.8815
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025500 [exp]	17.88	0.8725

Compare expression of checked genes

Potri.015G123400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.