Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 751 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 669 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 527 / 2e-169 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 513 / 6e-164 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 497 / 7e-158 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 479 / 8e-151 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G26540 468 / 3e-147 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 462 / 4e-145 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 460 / 1e-142 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 451 / 1e-141 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123400 [exp] 1427 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 1357 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 1345 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 1300 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 1243 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 1228 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 1204 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 1127 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 1070 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 795 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 771 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 771 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 761 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 701 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 680 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 649 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 611 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 595 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 451 / 2e-142 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G123800.1 pacid=42776477 polypeptide=Potri.015G123800.1.p locus=Potri.015G123800 ID=Potri.015G123800.1.v4.1 annot-version=v4.1 ATGGCTTCCCAAATCTTGCTCTTATCCATACCTTCCTTGTTTTTTTCCTTACTTGCTTATGCTTCCTTCTTTACTTCTTTTGCTTACTCGGCTGCCGGAG CTGAAATAGCAAATGGAAGGAAGGAAGCAGAAGCTCTTCTAAAATGGAAAGTCAGTCTTGACAACCGAAGCCAGTCTCTCCTGTCTTCATGGGCTGGAGA CAGCCCTTGCAACTGGGTCGGAATCAGTTGCGACAAGTCTGGTAGTGTTACCAACATAAGCCTGCCTAATTCTAGTTTGAGAGGCAGGCTTAATACTCTC AGATTCTCTTCCTTTCCTAACTTGATTGTGCTTATCCTTCGCAACAACTCCCTCTATGGGTCCGTTCCTTCACATATAGGTAACCTTTCTAACCTCTCCA TCCTTGACTTGTCTTTCAATAGCATTTCTGGCAACATTCCATCAGAAATAAGCACAATGAAAAGCATTAGAGTGTTTACCCTGTCTGAAAACCATATCGG TGGCTCCATCCCTAATGAAATAGGAATGTTGAGTTCACTTTCTCAAATAATTTGGCATGAAAATGATCTCGGAGGATTAGTCCCTGCGTCTATAAGCAAT TTGAGCCACTTAACTGATCTTTATCTCAATGGAAATCAACTTTCTGGTGGCATACCACAAGAAGTTGGAAAATTGAGATCTCTTGATTTGCTTGATTTGT CGAATAACAACCTTAGTGGTGTTCTTCCTACGTCCATAGGAAACTTAAGCAACTTGTCTTTTCTTTACCTTTACGAAAACAAACTCTCTGGTTTCTTACC TAGAGAAGTAGGAATGCTTGAAGACCTATTAACCCTTCAGTTGTCCGATAATAATTTTGAAGGTCCAATCCCTACTTCCATAGGAAATATGAAATCTCTC AATTTCCTTCAACTAAAACAAAATTTTCTCACTGGTAAAATACCTGCGTCTTTTGGAAACCTCACAGGATCTCTCACTTCTTTAGATTTGTCATATAATA ATCTAAATGGTACAATACCAGCATCTTTAGGAAATTTAATAATCTTATCTCAACTTCTCCTTGCGAATAACAGTCTTTTTGGTCCCATTCCTCCAGAAAT GAACAATCTTACCCATTTATATTCGTTACAAATATATTCTAATAGATTGTCTGGTAATCTACCACGAGATGTGTGCCTTGGTGGATTACTTTCATATTTT AGTGCGTTGGACAATTATTTCACGGGACCTATCCCAAAAAGCTTGAGAAATTGCAGCAGCTTGTTGAGACTCAGACTTGAGAGAAACCAGCTTAGTGGAA ACATATCTGAAGCTTTTGGCACACATCCCTATTTGTACTACATGGGTTTGAGTGATAATTTATTGCATGGTGAACTTTCATGGAAATGGGATCAGTTTAA CAATCTGACAGTCTTCAAAATTTCTGGAAACAAAATCTCTGGAATAATACCAGCTGCTCTTGGAAAGGCAACTCATCTACAAGTTCTTGACCTCTCGTCA AATCAACTAGTTGGGAGAATTCCAAAAGAATTGGGAAATTTGAAGTTAATTGAACTTGCACTCAACGATAACAAACTTTCAGGTGATATTCCTTTCGATG TCGCATCGCTATCTGATCTCGAAAGGCTTGGCCTGGCAGCGAACAATTTTAGTGCAACAATTCTTAAACAGCTTGGCAACTGCTCAAAACTGATATTCTT GAATATGAGCAAGAATAGATTCACAGGGAATATTCCTGCTGAGATGGGGTCTTTACAGTCTCTTCAAAGTCTTGATCTCAGTTGGAATTCCCTCGTGGGA GGTATAGCACCGGAGCTTGGACAGCTGCAGCGGCTAGAGTTTCTGAACCTCTCCCATAATATGCTGTCTGGTCTCATTCCAACCAGTTTTAGTAGACTGC AAAGCCTCACTAAAGTGGATGTATCCTATAACAAGTTAGAGGGTCCCATTCCTGACATCAAAGCCTTTCGCGAAGCACCATTTGAAGCAATTAGCAACAA CACCAACCTGTGTGGCAATGCTACTGGTTTGGAGGCTTGTTCTGTTCTCATGAAAAACAAAACTGTGCACAAGAAGGGCCCCAAAGTTGTCTTTTTGACT ATATTTTCTCTGCTGGGTAGTTTGTTGGGCCTGATTGTAGGATTTCTTATCTTTTCCCAAAGCAGAAGAAAGAAAAGGTTAATGGAAACACCACAGAGAG ATGTTGCCGCGAGATGGTGCCCTGATGGGGAACTGCTCTACGAGGACATCATTGAGGCTACTGAGGAATTCAACTCCAAATATTGCATTGGTACAGGAGG GTATGGAGCTGTTTACAAAGCTGTACTTCCATCAGAACAAGTCCTTGCCGTGAAGAAATTCCACCAAACACCAGAAGTTGAGATGACCATCTTGAAAGCT TTTAGAAGCGAGATTGATGTCTTAATGGGTATACGGCATCGAAATATTGTGAACCTGTATGGTTTCTGCTCGCATGCCAAACACTCATTTTTGGTATATG AATTTGTGGAAAGGGGAAGTTTAAGAAAGGTATTGAACGACGAGGAACAAGCAGCAAATATGGATTGGGATAAAAGGATGAATCTTATCGAAGGCGTAGC CAATGCTTTATCCTACATGCACCATGACTGCTCTCCTCCGATTATTCATAGAGACATTTCCAGCAACAATGTTCTTTTGGATTCAGAATATGAGGCTCAT GTCTCTGACTTCGGCACAGCCAGGCTCTTAATGCCTGACTCATCCAATTGGACATCATTTGCTGGCACCTTTGGGTACACAGCTCCAGAGTTGGCTTACA CAATGAAAGTGCATGAAAAATGTGATGTGTTTAGCTTTGGAGTATTAACATTGGAAGTAATGATGGGAAAGCATCCTGGCGATTTCATCTCATCTCTGAT GTTTTCTGCTTCCACCTCCTCATCATCACCAACCGGTTGCAATACACTCTTGAATGATGTTTTAGACCAGCGCCTCCCACCTCCTGAAAACGAACTTGCG GACGGTGTGGCACTTGTTGCAAAACTAGCGTTTGCTTGCTTGCAGACCGATCCCCATCATCGGCCAACAATGCGACAAGTTTCTACAGAGCTTACAACTC GTTGGCCACCATTGCCAAAGCTATTCTCCACGATAGAATTGGAAGATGAACTGGTTCACAGAAATGTTAATGGTTGA
AA sequence Show only first row Show all	>Potri.015G123800.1 pacid=42776477 polypeptide=Potri.015G123800.1.p locus=Potri.015G123800 ID=Potri.015G123800.1.v4.1 annot-version=v4.1 MASQILLLSIPSLFFSLLAYASFFTSFAYSAAGAEIANGRKEAEALLKWKVSLDNRSQSLLSSWAGDSPCNWVGISCDKSGSVTNISLPNSSLRGRLNTL RFSSFPNLIVLILRNNSLYGSVPSHIGNLSNLSILDLSFNSISGNIPSEISTMKSIRVFTLSENHIGGSIPNEIGMLSSLSQIIWHENDLGGLVPASISN LSHLTDLYLNGNQLSGGIPQEVGKLRSLDLLDLSNNNLSGVLPTSIGNLSNLSFLYLYENKLSGFLPREVGMLEDLLTLQLSDNNFEGPIPTSIGNMKSL NFLQLKQNFLTGKIPASFGNLTGSLTSLDLSYNNLNGTIPASLGNLIILSQLLLANNSLFGPIPPEMNNLTHLYSLQIYSNRLSGNLPRDVCLGGLLSYF SALDNYFTGPIPKSLRNCSSLLRLRLERNQLSGNISEAFGTHPYLYYMGLSDNLLHGELSWKWDQFNNLTVFKISGNKISGIIPAALGKATHLQVLDLSS NQLVGRIPKELGNLKLIELALNDNKLSGDIPFDVASLSDLERLGLAANNFSATILKQLGNCSKLIFLNMSKNRFTGNIPAEMGSLQSLQSLDLSWNSLVG GIAPELGQLQRLEFLNLSHNMLSGLIPTSFSRLQSLTKVDVSYNKLEGPIPDIKAFREAPFEAISNNTNLCGNATGLEACSVLMKNKTVHKKGPKVVFLT IFSLLGSLLGLIVGFLIFSQSRRKKRLMETPQRDVAARWCPDGELLYEDIIEATEEFNSKYCIGTGGYGAVYKAVLPSEQVLAVKKFHQTPEVEMTILKA FRSEIDVLMGIRHRNIVNLYGFCSHAKHSFLVYEFVERGSLRKVLNDEEQAANMDWDKRMNLIEGVANALSYMHHDCSPPIIHRDISSNNVLLDSEYEAH VSDFGTARLLMPDSSNWTSFAGTFGYTAPELAYTMKVHEKCDVFSFGVLTLEVMMGKHPGDFISSLMFSASTSSSSPTGCNTLLNDVLDQRLPPPENELA DGVALVAKLAFACLQTDPHHRPTMRQVSTELTTRWPPLPKLFSTIELEDELVHRNVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123800 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124400 [exp]	2.00	0.8506
AT4G08850			Leucine-rich repeat receptor-l...		Potri.006G261900 [exp]	12.32	0.8451
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	16.97	0.8341
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074900 [exp]	18.33	0.7506
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411000 [exp]	20.24	0.8107
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232600 [exp]	25.69	0.7868
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014600 [exp]	28.49	0.7805
AT1G60420			DC1 domain-containing protein ...		Potri.010G059800 [exp]	29.79	0.7380
					Potri.014G115800 [exp]	31.11	0.7738
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019400 [exp]	32.44	0.7718

Compare expression of checked genes

Potri.015G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.