Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35110 808 / 0 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G124500 [exp] 1123 / 0 AT2G35110 2139 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.012G124400 [exp] 1044 / 0 AT2G35110 2305 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124200 [exp] 169 / 4e-50 AT2G35110 87 / 2e-20 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036217 [exp] 860 / 0 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10038353 [exp] 584 / 0 AT2G35110 1796 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10036218 [exp] 44 / 4e-05 AT1G31170 65 / 2e-14 sulfiredoxin (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09735 [poplar] [flax] Nckap1 Membrane-associated apoptosis protein
Representative CDS sequence Show only first row Show all	>Potri.015G123900.2 pacid=42775293 polypeptide=Potri.015G123900.2.p locus=Potri.015G123900 ID=Potri.015G123900.2.v4.1 annot-version=v4.1 ATGTTGGAAGCTGCGATGCAAAGGTTGACCAACTTGTTTTCAGTTCTGAATGATATGGAGCCTATATGTGTTCTAAACCATGTCTTTGTTCTGAGGGAGT ACATGAGAGAGGGCATACTTGGCAACTTCAGGAGGAGATTGCTTGCAGTATTAAAAGCTGACAATGATCTTCAACGGCCTTCTGTCCTAGAGTCCTTGAT TCACAGGCACTTGAACATTGTCTATCTAGCAGAGCAACATATCAGCATGGATCTTACTCATGGTATTCAAGAAGTTCTACTAATTGAGGCCTTCTCAGGA CCTGTGTCTTCTCTTCACTTGTTTGAAAAACCAGCAGAGCAGCTTACTGGGTCGGCCACTGAAGTTGTCTGCAACTGGTACATAGAAAACATTGTCAAGG ATGTATCAGGTGCTGGAATCCTTTTTACACCAATCCACAAATGCTTTAAAAGCACGAGGCCTGTTGGTGGATATTTTGCAGAGTTGGTCACCGATCTCAG AGAATTGCAGGCCTTTGTTCGTGTATTTGGTGGCTATGGCGTTGACAGGCTAGACAGAATGATGAGAGAGCACACAGCAGCACTCTTGAATTGCATTGAC ACATCATTACGGTCAAACCATGAAGTGTTAGAGGCAGTTGCTGGCAGCATGCATTCTGGTGACAGAATAGAAAGAGAGGCATGTTCCAGGCAGAATGTGG ACTTGGACACAGTAATTGGATTTTGCATTGAGGGAGGACAAGCACTTGCTTTTGATCAGCTTCTTGCTGAAGCAGCTGGGGTCGTGCTTGATGAGGGTGC ACCCTTGATATATTCACTACTGTCTGGGGTGGTTAAGCATATACCCGAAGAAATATCGGAAAAGAAGGAAATCAGAAGAATAAGAGGGGTGGCAAACAGT CTTAATATAGTTGGAGATCATGATTCAGAATGGATCAGATCAATTCTAGAGGATGTTGGGGGTGCAAATGATGGTTCTTGGACATTGTTGCCTTATTTAT TTGCCACCTTCATGACATCAAAGATATGGAATACTACTGGCTTCAATGTTGATACAGGGGGCTTCAAAAACAATATCCATTGTCTGGCAAGGTGCATGAA TGCTGTGATTGCCGGTAGTGAGTTAGTGAGATTGGAACGCGAACATCAGCAGAGACAACAGTCTCTCTCTAATGGCCATCTTGATGAGGCTTTGGATCCT GAAATACATAGCCGTTTGTCTGCTGAAGCAAGTATAAAGTCTGCAATGCAGCTTTTTGTCAAATTTGCAACTGGTATTGTGCTAGATTCTTGGAGTGAAG CCAATAGATCTAATCTTGTAGCAAAGCTGATTTTCTTGGACCAACTTTGTGAGATCTCACCGTATCTTCCAAGAAGCTCCCTCGAAGCCTATGTTCCGTA CGCAATTCTCCGTTCAATTTATAGCCAGTACTACTCAAATTCTCCATCCATGCCTCTGGCACTACTAAGTGTCTCACCCCGCCATTCACCTGCTGTATCA CTGTCTCACACATCTCCTGCAGTGAACCATTTTTACGATATGGATAGTGGAAGCCTTCGCAGCACGGATAATAAACATCGAAATGTTCCCCGCTCTGGGC CTTTGGATTATAGTTCAAGCAGAAAAGTTAAACTTGTCGAAGGCTCAACTTCTGGGAGCACAGGTCGTAGTCCACTACCACGGTTTGCAGTCTCAAGATC CGGGCCTTTAATGTACAAGTAG
AA sequence Show only first row Show all	>Potri.015G123900.2 pacid=42775293 polypeptide=Potri.015G123900.2.p locus=Potri.015G123900 ID=Potri.015G123900.2.v4.1 annot-version=v4.1 MLEAAMQRLTNLFSVLNDMEPICVLNHVFVLREYMREGILGNFRRRLLAVLKADNDLQRPSVLESLIHRHLNIVYLAEQHISMDLTHGIQEVLLIEAFSG PVSSLHLFEKPAEQLTGSATEVVCNWYIENIVKDVSGAGILFTPIHKCFKSTRPVGGYFAELVTDLRELQAFVRVFGGYGVDRLDRMMREHTAALLNCID TSLRSNHEVLEAVAGSMHSGDRIEREACSRQNVDLDTVIGFCIEGGQALAFDQLLAEAAGVVLDEGAPLIYSLLSGVVKHIPEEISEKKEIRRIRGVANS LNIVGDHDSEWIRSILEDVGGANDGSWTLLPYLFATFMTSKIWNTTGFNVDTGGFKNNIHCLARCMNAVIAGSELVRLEREHQQRQQSLSNGHLDEALDP EIHSRLSAEASIKSAMQLFVKFATGIVLDSWSEANRSNLVAKLIFLDQLCEISPYLPRSSLEAYVPYAILRSIYSQYYSNSPSMPLALLSVSPRHSPAVS LSHTSPAVNHFYDMDSGSLRSTDNKHRNVPRSGPLDYSSSRKVKLVEGSTSGSTGRSPLPRFAVSRSGPLMYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	0	1
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	3.16	0.9002
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	4.00	0.8880
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	6.92	0.8938
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	8.00	0.8983
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	8.06	0.8699
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	9.00	0.8771
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	10.72	0.8843
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	10.95	0.8699
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	11.48	0.8730
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.001G056100 [exp]	14.69	0.8211

Compare expression of checked genes

Potri.015G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.