Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 292 / 6e-92 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 270 / 3e-83 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 207 / 8e-61 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 204 / 7e-60 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 199 / 6e-58 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65700 192 / 9e-56 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 192 / 1e-55 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 184 / 1e-52 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 181 / 1e-51 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 180 / 2e-51 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123100 [exp] 494 / 2e-170 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 495 / 6e-170 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 493 / 9e-170 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 492 / 2e-168 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 485 / 6e-166 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 486 / 2e-165 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 469 / 3e-160 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 402 / 7e-134 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 385 / 5e-127 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020936 [exp] 284 / 1e-90 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 284 / 7e-89 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 284 / 1e-88 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008229 [exp] 263 / 1e-88 AT4G08850 261 / 8e-81 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 283 / 2e-88 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005016 [exp] 260 / 3e-87 AT4G08850 268 / 5e-83 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 276 / 2e-85 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 275 / 8e-85 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 262 / 4e-81 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 262 / 1e-80 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G124100.2 pacid=42775967 polypeptide=Potri.015G124100.2.p locus=Potri.015G124100 ID=Potri.015G124100.2.v4.1 annot-version=v4.1 ATGAGCAGCTTGAAAGCTTTTAGAAGCGAGATTGATGTCTTAATGGGTATACGGCATCGAAACATTGTGAAGCTGTATGGTTTCTGCTCGCATGTCAAAC ATTCATTTTTGGTATATGAATATGTGGAAAGGGGAAGTTTAAGAAAGGTACTGAACGACGAGAAACTAGCAGCAAAGATGGATTGGGAAAAAAGGATAAA TCTTATCAAAGGCGTAGCCAATGCTTTATCCTACATGCACCATGACTGCTCTCCTCCGATTATTCATAGAGACATTTCCAGCAACAATGTTCTTTTGGAT TCAGAATATGAGGCTCATGTCTCTGACTTCGGCACAGCAAGGCTCCTAATGCCTGACTCCTCCAACTGGACATCATTTGCTGGCACCTTTGGTTACACAG CTCCAGAGTTGGCATACACAATGAAAGTGGATGAAAAATGTGATGTTTATAGCTTTGGAGTATTAACATTGGAAGTAATGATGGGAAAGCATCCTGGCGA TTTGATCTCATCTTTGATGTTTTCTGCTTCCACCTCCTCATCATCACCAACCGGTCACAATACACTCTTGAAGGATGTTTTAGACCAGCGCCTCCCACCT CCTGAAAACGAGCTTGCGGACGGTGTGGCACATGTTGCAAAACTAGCGTTTGCTTGCTTGCAGACCGATCCCCATTATCGGCCAACAATGCGAAAAGTTT CTACAGAGCTTACAACTCGTTGGCCTCCATTGCCAAAGCTATTCTCCACGATAGAATTGGAAGATGAACTGGTTCACAGAAATGTTAATGGTTGA
AA sequence Show only first row Show all	>Potri.015G124100.2 pacid=42775967 polypeptide=Potri.015G124100.2.p locus=Potri.015G124100 ID=Potri.015G124100.2.v4.1 annot-version=v4.1 MSSLKAFRSEIDVLMGIRHRNIVKLYGFCSHVKHSFLVYEYVERGSLRKVLNDEKLAAKMDWEKRINLIKGVANALSYMHHDCSPPIIHRDISSNNVLLD SEYEAHVSDFGTARLLMPDSSNWTSFAGTFGYTAPELAYTMKVDEKCDVYSFGVLTLEVMMGKHPGDLISSLMFSASTSSSSPTGHNTLLKDVLDQRLPP PENELADGVAHVAKLAFACLQTDPHYRPTMRKVSTELTTRWPPLPKLFSTIELEDELVHRNVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124100 [exp]	0	1
AT5G61520			Major facilitator superfamily ...		Potri.016G120700 [exp]	2.00	0.8429
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019700 [exp]	3.16	0.8255
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020100 [exp]	4.58	0.7871
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019600 [exp]	5.00	0.7930
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411300 [exp]	7.61	0.7287
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124151 [exp]	8.48	0.8109
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020300 [exp]	13.85	0.7580
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.006G213400 [exp]	30.03	0.7365	Pt-AFC1.2
					Potri.003G153266 [exp]	30.39	0.7527
					Potri.003G153332 [exp]	31.43	0.7414

Compare expression of checked genes

Potri.015G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.