Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 184 / 2e-52 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 165 / 1e-45 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G72180 131 / 7e-34 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 128 / 7e-33 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 126 / 5e-32 Leucine-rich receptor-like protein kinase family protein (.1) AT2G41820 121 / 2e-30 Leucine-rich repeat protein kinase family protein (.1) AT3G24240 121 / 2e-30 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 120 / 5e-30 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G49770 120 / 5e-30 Leucine-rich repeat protein kinase family protein (.1) AT4G28650 119 / 7e-30 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122900 [exp] 369 / 6e-121 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 368 / 1e-120 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 369 / 3e-120 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 367 / 7e-120 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 365 / 5e-119 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 364 / 9e-119 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 364 / 4e-118 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 315 / 5e-100 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 249 / 3e-75 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 209 / 9e-61 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 200 / 2e-58 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 196 / 4e-56 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 196 / 4e-56 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 191 / 1e-54 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031738 [exp] 179 / 2e-51 AT4G08850 425 / 8e-137 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 177 / 1e-49 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 164 / 4e-45 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 164 / 5e-45 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 161 / 5e-44 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G124151.1 pacid=42776122 polypeptide=Potri.015G124151.1.p locus=Potri.015G124151 ID=Potri.015G124151.1.v4.1 annot-version=v4.1 ATGGCTTCCCACATCTTTCTCTTATCCACACCTTTTTTGGTTTTTTCCTTACTTGCTTATGCTTCCTTCCTTGCTTCTTTTGCTTACTCGGCTACTGGAG CTGAAGTAGCAAATGGAAGGAAGGAAGCGGAAGCTCTTCTAGAATGGAAAGTTAGTCTTGACAACCAAAGCCAGTCTCTCCTGTCTTCTTGGGCTGGAGA GAGCCCTTGCAACTGGTTCGGAATCAGCTGCGACAAGTCTGGCAGTGTCATCAACATAAGTCTGCCCAATTCTAGTTTGAGAGTTACACATTTGTATTCG TTACATCTATTTTCTAATAGATTGTCTGGTAATCTACCACGAGATGTGTGCCTTGGTGGATTACTTTCATATTTTGCTGCGTTTGAAAATTATTTTACGG GACCTATCCCGAAAAGCTTGAAAAATTGCAGCAGTTTGGTGAGACTCAGACTTGAGAGAAACCAACTTAGTGGAAACATATCTGAAGCTTTTGGCACTCA TCCTCATTTGAACTACATGGATTTGAGTGATAATGAACTGCATGGTGAACTTTCATTGAAATGGGAGCAGTTTAACAATCTGACAGCCTTCAAGATTTCT GGAAACAAGATTTCTGGAGAAATACCAGCAGTTCTTGGAAAGGCAACTCAATTACAAGTTCTTGACCTCTCGTCAAATCAACTAGTTGGGAGAATTCCAA AAGAATTGGGAAATTTAAAGTTGATTGAACTTGCACTCAACGATAACAGACTTTCAGGTGATATTCCTTTCGATGTCACATCGTTACGTCATCTTGAAAG GCTTGGCCTAGCTGCGAACAATTTTAGCGCAACGATTCTTAAACAGCTTAGCAAGTGCTCAAAACTGATATTCTTGAATATCAGCAAGAATAGATTTACA AAGCTGTACTTCCATCAGAACAAATCCTTGCCGTGA
AA sequence Show only first row Show all	>Potri.015G124151.1 pacid=42776122 polypeptide=Potri.015G124151.1.p locus=Potri.015G124151 ID=Potri.015G124151.1.v4.1 annot-version=v4.1 MASHIFLLSTPFLVFSLLAYASFLASFAYSATGAEVANGRKEAEALLEWKVSLDNQSQSLLSSWAGESPCNWFGISCDKSGSVINISLPNSSLRVTHLYS LHLFSNRLSGNLPRDVCLGGLLSYFAAFENYFTGPIPKSLKNCSSLVRLRLERNQLSGNISEAFGTHPHLNYMDLSDNELHGELSLKWEQFNNLTAFKIS GNKISGEIPAVLGKATQLQVLDLSSNQLVGRIPKELGNLKLIELALNDNRLSGDIPFDVTSLRHLERLGLAANNFSATILKQLSKCSKLIFLNISKNRFT KLYFHQNKSLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124151 [exp]	0	1
AT5G02110		CYCD7;1	CYCLIN D7;1 (.1)		Potri.006G088300 [exp]	6.48	0.8713
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124100 [exp]	8.48	0.8109
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G155700 [exp]	9.21	0.8227
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	9.48	0.8681
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.018G049401 [exp]	14.86	0.8332
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G099900 [exp]	14.96	0.8462	DREB56
AT3G06840			unknown protein		Potri.008G219500 [exp]	22.58	0.8373
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247800 [exp]	22.91	0.7989	SGGN1.1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411300 [exp]	23.17	0.7270
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	24.85	0.8533

Compare expression of checked genes

Potri.015G124151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.