Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 643 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 600 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 429 / 3e-133 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 417 / 1e-128 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 411 / 2e-125 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 387 / 1e-118 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 387 / 2e-118 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G48940 384 / 3e-116 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 381 / 5e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 380 / 6e-116 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123700 [exp] 1545 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 1482 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 1440 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 1432 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 1403 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 1385 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 1184 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 1025 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 984 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020935 [exp] 679 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 634 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 620 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 611 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 605 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 605 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 602 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 577 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 560 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10011761 [exp] 432 / 1e-135 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G124400.2 pacid=42775161 polypeptide=Potri.015G124400.2.p locus=Potri.015G124400 ID=Potri.015G124400.2.v4.1 annot-version=v4.1 ATGGCTTCCCATATCTTGCTCTTATCCATACCTTCGTTGTTTTGTTCCTTACTTGCTTATGCTACCTTCTTTACTTCTTTTGCTTACTCGGCTACTGGAG CTGAAGTAGCAAATGGAAGGAAGGAAGCAGAAGCTCTTCTAGAATGGAAAGTCAGTCTTGACAACCGAAGCCAGTCTCTCCTGTCTTCTTGGGCTGGAGA CAGCCCTTGCAACTGGGTCGGAATCAGTTGCGACAAGTCTGGTAGCGTCACCAACATAAGTCTTCCTAATTCTAGTTTGAGAGGTACCCTAAATAGTCTC AGATTCCCTTCCTTTCCTAACTTGACTGTGCTTATCCTTCGCAACAACTCGCTCTATGGGTCCATTCCTTCACGTATAGGTAACCTTATCAAACTTGATT TGTCTTCAAATAGCATTTCTGGCAACATACCACCAGAAGTTGGAAAATTGGTATCTCTTGATTTGCTTGATTTGTCAAAAAACAACCTTAGTGGTGGTCT TCCTACGTCCATAGGAAACTTAAGCAACTTGTCGTATCTTTACCTTCATGGCAACGAACTCTCTGGTTTCATACCTAGGGAAGTAGGAATGCTTGAACAT CTATCTGCCCTTCACTTGTCCGGAAATAATTTTGAAGGTCCAATCCCTGCTTCCATAGGAAACATGAGATCTCTCACCAGTTTACTTTTGTCATCTAATA ATCTAACTGGTGCAATACCAGCATCTTTAGGAAACTTAGGAAACCTGACTACTTTAAATTTGTCATCTAATAATCTAACTGGTACAATACCAGCATCTCT AGGCAATTTAAGAAGCTTATCTGAACTTCACCTTGCGAAAAACAGTCTTTTTGGTCCTATTCCTCCAGAAATGAACAACCTTACACATTTGTATTGGTTA CATATATATTCTAATAGATTGTCTGGAAATCTACCACGAGATGTGTGCCTTGGTGGATTACTTTCACATTTTGCGGCGTTGGACAATTATTTCACGGGAG CTATCCCAAAAAGCTTGAGAAATTGCAGCAGCTTGTTGAGACTCAGACTTGAGAGAAACCAACTTAGTGGAAACATTTCTGAAGCTTTTGGCACACATCC TCATGTGTACTACATGGATTTGAGTGATAATGAATTGCATGGTGAACTTTCATTGAAATGGGAGCAGTTTAACAATCTGACAACCTTCAAGATTTCTGGA AACAAGATTTCTGGAGAAATACCAGCAGCTCTTGGAAAGGCAACTCATTTACAAGCTCTTGACCTCTCGTCAAATCAACTAGTTGGGAGAATTCCAAAAG AATTGGGAAATTTAAAGTTGATTGAACTTGAACTCAACGATAACAAACTATCAGGTGATATTCCTTTCGATGTCGCATCGCTATCTGATCTCGAAAGGCT TGGCCTGGCCGCGAACAATTTTAGCGCAACAATTCTTAAACAGCTTGGCAAGTGCTCAAAACTGATATTCTTGAATATGAGCAAGAATAGCTTCGCAGGG ATTATTCCTGCTGAGATGGGGTCTTTACAGTCTCTTCAAAGTCTTGATCTCAGTTGGAATTCCCTGATGGGAGGTATAGCACCGGAGCTTGGACAGCTGC AGCGGCTAGAGGAATTAAACCTCTCCCATAATATGCTGTCTGGTCTCATTCCAGCCAGTTTTAGTAGACTGCAAGGCCTCACTAAAGTGGATGTATCCTT TAACAAGTTAGAGGGTCCCATTCCTGACATCAAAGCCTTTCGCGAGGCACCATTTGAAGCAATTCGCAACAACACCAACCTCTGTGGCAATGCTACTGGT TTGGAGGCTTGTTCTGATCTCATGAAAAACAAAACTGTGCACAAGAAGGGCCCCACAGTTATCATTTTGACTGTATTTTCTCTGCTGGGTAGTTTGTTGG GCCTGATTGTAGGTTTCCTTATCTTTTTCCAAAGCGGAAGAAAGAAAAGGTTAATGGAAACACCTCAAAGAGATGTTCCCGCGAGATGGTGCACTGGTGG GGAACTGCGCTACGAGGACATCATTGAGGCTACTGAGGAATTCAACTCCGAATATTGCATTGGTACAGGAGGGTATGGAGTTGTTTACAAAGCTGTACTT CCATCAGAACAAGTCCTTGCCGTGAAGAAGTTTCACCAAACACCAGAAGTTGAGATGAGCAGCTTGAAAGCTTTTAGAAGCGAGATTGATGTCTTAATGG GTATACGGCATCGAAATATTGTGAAGCTGTATGGTTTCTGCTCGCATGCCAAACACTCGTTTTTGGTATATGAATTTGTGGAAAGGGGAAGTTTAAGAAA GTTACTGAACGACGAGGAACAAGCAACAAAGATGGATTGGGATAAAAGGATAAATCTTATCAAAGGCGTTGCCAATGCTTTATCCTACATGCACCATGAC TGCTCTCCTCCGATTATTCATAGAGACATTTCCAGCAACAATGTTCTTTTGGATTCAGAATATGAGGCTCATGTCTCTGACTTCGGCACAGCAAGGCTCT TAATGCCTGACTCATCCAATTGGACATCATTTGCTGGCACCTTTGGGTACACAGCTCCAGAGTTGGCATACACAATGAAAGTGGATGAAAATTGTGATGT GTATAGCTTTGGAGTATTAACATTGGAAGTAATGATGGGAAAGCATCCTGGCGATTTCATCTCATCTCTGATGTTTTCTGCTTCCACCTCCTCATCATCA CCAAGCGGTCACAATACACTCTTGAAGGATGTTTTAGACCAGCGCCTGCCACCTCCTGAAAACGAGCTTGCGGACGGTGTGGCACTTGTTGCAAAACTAG CGTTTGCTTGCTTGCAGACCGATCCCCATTATCGGCCAACAATGCGACAAGTTTCTACAGAGCTTTCAACTCGTTGGCCACCATTTCCAAAACTATTCTC CACGATAGAATTGGAAGATGAACTGGTTCACAGAAATGTTAATGGTTGA
AA sequence Show only first row Show all	>Potri.015G124400.2 pacid=42775161 polypeptide=Potri.015G124400.2.p locus=Potri.015G124400 ID=Potri.015G124400.2.v4.1 annot-version=v4.1 MASHILLLSIPSLFCSLLAYATFFTSFAYSATGAEVANGRKEAEALLEWKVSLDNRSQSLLSSWAGDSPCNWVGISCDKSGSVTNISLPNSSLRGTLNSL RFPSFPNLTVLILRNNSLYGSIPSRIGNLIKLDLSSNSISGNIPPEVGKLVSLDLLDLSKNNLSGGLPTSIGNLSNLSYLYLHGNELSGFIPREVGMLEH LSALHLSGNNFEGPIPASIGNMRSLTSLLLSSNNLTGAIPASLGNLGNLTTLNLSSNNLTGTIPASLGNLRSLSELHLAKNSLFGPIPPEMNNLTHLYWL HIYSNRLSGNLPRDVCLGGLLSHFAALDNYFTGAIPKSLRNCSSLLRLRLERNQLSGNISEAFGTHPHVYYMDLSDNELHGELSLKWEQFNNLTTFKISG NKISGEIPAALGKATHLQALDLSSNQLVGRIPKELGNLKLIELELNDNKLSGDIPFDVASLSDLERLGLAANNFSATILKQLGKCSKLIFLNMSKNSFAG IIPAEMGSLQSLQSLDLSWNSLMGGIAPELGQLQRLEELNLSHNMLSGLIPASFSRLQGLTKVDVSFNKLEGPIPDIKAFREAPFEAIRNNTNLCGNATG LEACSDLMKNKTVHKKGPTVIILTVFSLLGSLLGLIVGFLIFFQSGRKKRLMETPQRDVPARWCTGGELRYEDIIEATEEFNSEYCIGTGGYGVVYKAVL PSEQVLAVKKFHQTPEVEMSSLKAFRSEIDVLMGIRHRNIVKLYGFCSHAKHSFLVYEFVERGSLRKLLNDEEQATKMDWDKRINLIKGVANALSYMHHD CSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLMPDSSNWTSFAGTFGYTAPELAYTMKVDENCDVYSFGVLTLEVMMGKHPGDFISSLMFSASTSSSS PSGHNTLLKDVLDQRLPPPENELADGVALVAKLAFACLQTDPHYRPTMRQVSTELSTRWPPFPKLFSTIELEDELVHRNVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124400 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123800 [exp]	2.00	0.8506
AT1G71865			unknown protein		Potri.019G086700 [exp]	2.44	0.8410
					Potri.010G007888 [exp]	4.69	0.8607
					Potri.010G007943 [exp]	6.92	0.8248
AT4G08850			Leucine-rich repeat receptor-l...		Potri.006G261900 [exp]	7.07	0.8735
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	8.94	0.7974
					Potri.010G007965 [exp]	9.94	0.8234
AT2G44930			Plant protein of unknown funct...		Potri.014G053900 [exp]	14.49	0.7848
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019600 [exp]	15.87	0.7728
AT5G39990			Core-2/I-branching beta-1,6-N-...		Potri.009G003300 [exp]	15.87	0.8131

Compare expression of checked genes

Potri.015G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.