Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35110 2139 / 0 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G124400 [exp] 2510 / 0 AT2G35110 2305 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123900 [exp] 1120 / 0 AT2G35110 807 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124200 [exp] 171 / 6e-49 AT2G35110 87 / 2e-20 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123001 [exp] 100 / 1e-24 AT2G35110 98 / 7e-25 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036217 [exp] 2217 / 0 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10038353 [exp] 1706 / 0 AT2G35110 1796 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10036218 [exp] 47 / 5e-06 AT1G31170 65 / 2e-14 sulfiredoxin (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09735 [poplar] [flax] Nckap1 Membrane-associated apoptosis protein
Representative CDS sequence Show only first row Show all	>Potri.015G124500.7 pacid=42775323 polypeptide=Potri.015G124501.1.p locus=Potri.015G124500 ID=Potri.015G124500.7.v4.1 annot-version=v4.1 ATGGCAAACTCGTGGCAACATTATTCGACCTACGATCCATCTCTATCGCCTGCTGGTGTAAGATCGAGGGAATGGGAGGGTCCGTCGAGTTGGACTGAGT ATTTGGGTCCTGATATGAGTTCGCCAATGACATCGAGGGTGTCTAGGAAAAAGGGTGGTTCAGATGGACAGGTTCAGAGTTCATGTGGTGGGTATCATAA GGGTTTGAATTTGGGGTGGGTAGTTCAACTTACTGAAGTAGCTGAAGGTCTTATGGCGAAAATGTATAGATTGAATCAAATATTGGATTGTCCGGATCCA GTTGGTCAAGTGTTTTCTGAAGCATTTTGGAAAGCGGGTGTGCTCCCAAATTATCCGAGGATTTGCTTATTGCTCTCGAAAAACTTTCCTGAGCATTTCA GTAAATTGCAGCTTGAACGAGTTGATAAGGTTGCTTTGGATGCTTTGAATGATGGCACTGAAGTTCATTTGCAGAGTTTGGAGCCTTGGTTCCAGCTACT TCTTGACCTGATGGCATTCCGAGAACAAGCTCTGCGACTCATATTGGATCTAAGTAGTACTGTTATTACCTTGTTGCCCCATCAGAACTCGCTTATTCTG CATGCATTTATGGATCTCTTTTGTTCCTTTATCCGTGTCAATCTTTTTTCTGAGAAGATACCGAGGAAAATGATGCTGCAAATGTATAACCTTCTGCATG CCATGTCAAGAAAAGATAGTGACTGTGATTTCTATCATCGGTTGGTTCAATTTATAGATTCTTATGATCCACCATTGAAAGGGTTACAAGAAGATCTAAA ATTTGTCAGTCCACGTATTGGAGAGGTTTTAGAGGCTGTGGGCCCTGTCATTTTCCTATCTACAGATACAAGGAAGCTTAGAAATGAGGGATTCCTAAGT CCATATCACCCTCGGTATCCAGATATACTGACGAATTCTGCTCACCCTGTGAGAGCCCAAGATCTAGCAAATGTTACTTCTTACAGGGAATGGGTTCTAC TTGGATATCTTGTTTGTCCAGATGAGCTGCTTCGTGTCACTAGCATTGATATCGCTCTGGTCGTACTGAAGGAAAATTTGATACTTACTGTATTCCGGGA TGAGTATGCACTTTTGCATGAGGATTATCAGCTATACGTTTTGCCTCGGATATTAGAATCGAAGAAGATGGCCAAGTCTGGGCGTACTAAGCAAAAAGAA GCAGATCTCGAGTATAGTGTGGCAAAGCACGTTGAGAAAATGATAAGCGAAGTGCACGAGCAATCTCTTCTATCTTGTGATGCCATTCACCATGAGAGGA GAGTGTTATTAAAACAAGAAATAGGAAGAATGGTACTGTTTTTCACTGATCAGCCAAGTTTATTGGCTCCAAACATTCAGATGGTATTCTCTGCCCTGGC ATTGGCACAGTCTGAGGTTATCTGGTATTTCCAACATGTAGGAATTGCATCATCAAAATCTAAAGCTGCTCGAGCAATACCTGTTGACATAGATCCAAAT GATCCAACTATTGGCTTTTTACTAGATGGAATGGATCATCTATGCTGTCTTGTGCGCAAGTATATTGCAGCTATCCGAGGCTATGCATTATCATACCTGT CTTCATGTGCTGGTAGAATCCGGTTTTTGCTGGGAACTCCAGGAATGGTGGCTCTTGATCTTGATGCTAGTTTAAAAGGGCTTTTCCAACAGATTGTTCA GCATTTGGAAAGCATACCAAAACTGCAGGGTGAAAATATTTCCGCCATCATGTGTGATTTATCTGAGTTTCGCAAGGATTGGTTGTCAATATTGATGATT GTCACATCGGCTAGGTCATCTATAAACATAAGACACTTGGAGAAAGCTACTGTCTCTACTGGAAAGGAAGGCTTACTGTCAGAAGGAAATGCTGCATACA ATTGGTCCAGATGCGTTGATGACTTAGAGTCGCAATTATCAAAGCATGGAACTCTAAAAAAGCTGTATTTTTACCATCAGCACCTTACAGTAGTCTTTCG GAACACCATGTTTGGACCAGAAGGACGTCCTCAGCATTGCTGTGCATGGCTTGGTGTTGCTAGTAGCTTTCCAGAGTGTGCTTCTCCAATTGTTCCAGAA GAGGTAACGAAAATTGGGCGAGATGCAGTCCTATATGTTGAGTCTCTTATTGAATCTATCATTGGAGGATTGGAGGGATTAATCAATATTCTTGATTCTG AAGGAGGATTTGGTGCCTTAGAGGCTCAGCTTCTTCCAGAGCAGGCTGCTTTTTATTTGAATGACACATCCAGAGTTTCAATTCCTACATCAAAATCTAC CAAGGGAGCAGTTGGGTTTCCTTTGCCTGGCCATGAGAGCTACCCTGAAAATAATAGTGCTATAAAAATGTTGGAAGCTGCGATGCAAAGGTTGACCAAC TTGTTTTCAGTTCTGAATGATATGGAGCCTATATGTGTTCTAAACCATGTCTTTGTTCTGAGGGAGTACATGAGAGAGGGCATACTTGGCAACTTCAGGA GGAGATTGCTTGCAGTATTAAAAGCTGACAATGATCTTCAACGGCCTTCTGTCCTAGAGTCCTTGATTCACAGGCACTTGAACATTGTCTATCTAGCAGA GCAACATATCAGCATGGACCTTACTCATGGTATTCAAGAAGTTCTACTAATTGAGGCCTTCTCAGGACCTGTGTCTTCTCTTCACTTGTTTGAAAAACCA GCAGATCAGCTTACTGGGTCGGCCACTGAAGTTGTCTGCAACTGGTACATAGAAAACATTGTCAAGGATGTATCAGGTGCTGGAATCCTTTTTACACCAA TCCACAAATGCTTTAAAAGCACGAGGCCTGTTGGTGGATATTTTGCAGAGTTGGTCACCGATCTCAGAGAATTGCAGGCCTTTGTTCGTGTATTTGGTGG CTATGGCGTTGACAGGCTAGACAGAATGATGAAAGAGCACACAGCAGCACTCTTGAATTGCATTGACACATCATTACGGTCAAACCATGAAGTGTTAGAG GCAGTTGCTGGCAGCATGCATTCTGGTGACAGAATAGAAAGAGAGGCATGTTCCAGGCAGATTGTGGACTTGGACACAGTAATTGGATTTTGCATTGAGG GAGGGCAAGCACTTGCTTTTGATCAGCTTCTTGCTGAAGCAGCTGGGGTCGTGCTTGATGAGGGTGCACCCTTGATATATTCACTACTGTCTGGGGTGGT TAAGCATATACCCGAAGAAATATCGGAAAAGAAGGAAATCAGAAGAATAAGAGGGGTGGCTAACAGTCTTAATATAGTTGGAGATCATGATTCAGAATGG ATCAGATCAATTCTAGAAGATGTTGGGGGTGCAAATGATGGTTCTTGGACATTGTTGCCTTATTTATTTGCCACCTTCATGACATCAAAGATATGGAATA GTACTGGCTTCAATGTTGATACAGGGGGCTTCAACAACAATATCCATTGTCTGGCAAGGTGCATGAGTGCTGTGATTGCCGGTAGTGAGTTAGTGAGATT GGAACGCGAACATCAGCAGAGACAACAGTCTCTCTCTAATGGCCATCTTGATGAGGCTTTGGATCCTGAAATACATAGCCGTTTGTCTGCTGAAGCAAGT ATAAAGTCTGCAATGCAGCTTTTTGTCAAATTTGCAACTGGTATTGTGCTAGATTCTTGGAGTGAAGCCAATAGATCTAATCTTGTAGCAAAGCTGATTT TCTTGGACCAACTTTGTGAGATCTCACCGTATCTTCCAAGAAGCTCCCTCGAAGCCTATGTTCCGTACGCAATTCTCCGTTCAATTTATAGCCAGTACTA CTCAAATTCTCCATCCATGCCTCTGGCACTACTAAGTGTCTCACCCCGCCATTCACCTGCTGTATCACTGTCTCACACATCTCCTGCAGTGAACCATTTT TACGATATGGATAGTGGAAGCCTTCGCAGCACGGATAATAAACATCGAAATGTTCGCCGCTCTGGGCCTTTGGATTATAGTTCAAGCAGAAAAGTTAAAC TTGTCGAAGGCTCAACTTCTGGGAGCACAGGTCGTAGTCCACTACCACGGTTTGCAGTCTCAAGATCCGGGCCTTTAATGTACAAGTAG
AA sequence Show only first row Show all	>Potri.015G124500.7 pacid=42775323 polypeptide=Potri.015G124501.1.p locus=Potri.015G124500 ID=Potri.015G124500.7.v4.1 annot-version=v4.1 MANSWQHYSTYDPSLSPAGVRSREWEGPSSWTEYLGPDMSSPMTSRVSRKKGGSDGQVQSSCGGYHKGLNLGWVVQLTEVAEGLMAKMYRLNQILDCPDP VGQVFSEAFWKAGVLPNYPRICLLLSKNFPEHFSKLQLERVDKVALDALNDGTEVHLQSLEPWFQLLLDLMAFREQALRLILDLSSTVITLLPHQNSLIL HAFMDLFCSFIRVNLFSEKIPRKMMLQMYNLLHAMSRKDSDCDFYHRLVQFIDSYDPPLKGLQEDLKFVSPRIGEVLEAVGPVIFLSTDTRKLRNEGFLS PYHPRYPDILTNSAHPVRAQDLANVTSYREWVLLGYLVCPDELLRVTSIDIALVVLKENLILTVFRDEYALLHEDYQLYVLPRILESKKMAKSGRTKQKE ADLEYSVAKHVEKMISEVHEQSLLSCDAIHHERRVLLKQEIGRMVLFFTDQPSLLAPNIQMVFSALALAQSEVIWYFQHVGIASSKSKAARAIPVDIDPN DPTIGFLLDGMDHLCCLVRKYIAAIRGYALSYLSSCAGRIRFLLGTPGMVALDLDASLKGLFQQIVQHLESIPKLQGENISAIMCDLSEFRKDWLSILMI VTSARSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDDLESQLSKHGTLKKLYFYHQHLTVVFRNTMFGPEGRPQHCCAWLGVASSFPECASPIVPE EVTKIGRDAVLYVESLIESIIGGLEGLINILDSEGGFGALEAQLLPEQAAFYLNDTSRVSIPTSKSTKGAVGFPLPGHESYPENNSAIKMLEAAMQRLTN LFSVLNDMEPICVLNHVFVLREYMREGILGNFRRRLLAVLKADNDLQRPSVLESLIHRHLNIVYLAEQHISMDLTHGIQEVLLIEAFSGPVSSLHLFEKP ADQLTGSATEVVCNWYIENIVKDVSGAGILFTPIHKCFKSTRPVGGYFAELVTDLRELQAFVRVFGGYGVDRLDRMMKEHTAALLNCIDTSLRSNHEVLE AVAGSMHSGDRIEREACSRQIVDLDTVIGFCIEGGQALAFDQLLAEAAGVVLDEGAPLIYSLLSGVVKHIPEEISEKKEIRRIRGVANSLNIVGDHDSEW IRSILEDVGGANDGSWTLLPYLFATFMTSKIWNSTGFNVDTGGFNNNIHCLARCMSAVIAGSELVRLEREHQQRQQSLSNGHLDEALDPEIHSRLSAEAS IKSAMQLFVKFATGIVLDSWSEANRSNLVAKLIFLDQLCEISPYLPRSSLEAYVPYAILRSIYSQYYSNSPSMPLALLSVSPRHSPAVSLSHTSPAVNHF YDMDSGSLRSTDNKHRNVRRSGPLDYSSSRKVKLVEGSTSGSTGRSPLPRFAVSRSGPLMYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	0	1
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	2.00	0.8980	Pt-MOR1.1
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	3.74	0.8652	MOR2,Pt-MOR1.2
AT2G27900			unknown protein		Potri.009G002900 [exp]	6.63	0.8069
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	6.63	0.8739
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	7.34	0.8587
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	8.00	0.7645
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	8.06	0.8699
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	8.48	0.8116
AT1G04650			unknown protein		Potri.001G053000 [exp]	8.77	0.8235
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	9.48	0.8825

Compare expression of checked genes

Potri.015G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.