Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48890 202 / 8e-66 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 186 / 2e-60 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT2G24940 107 / 3e-30 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT4G14965 84 / 9e-20 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137800 [exp] 194 / 9e-63 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 187 / 3e-60 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.018G016900 [exp] 110 / 1e-31 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.006G266200 [exp] 109 / 5e-31 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.016G022700 [exp] 79 / 1e-17 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038356 [exp] 252 / 4e-86 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 186 / 1e-59 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 186 / 1e-59 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 184 / 1e-58 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 184 / 1e-58 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10002241 [exp] 108 / 8e-31 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10029567 [exp] 110 / 2e-28 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10018026 [exp] 79 / 1e-17 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10042022 [exp] 71 / 1e-14 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1) Lus10034799 [exp] 57 / 5e-11 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G125100.1 pacid=42776459 polypeptide=Potri.015G125100.1.p locus=Potri.015G125100 ID=Potri.015G125100.1.v4.1 annot-version=v4.1 ATGGGCCTCTACGCAACTGCAATGGAAACCATGGAAGCATACACAGGCCTATCACCGGCAGCGTTTTTCACGATTGCCGCCGTTATGGTAGTGGTTTACA AGATAGTTTGCAGCATGTTTGTGGACCCAGAAGAGTTTGACAAGAAGCCCATCAACGCGAGTGGTAGCATCGCCACCAACCAACCACCACCACCACAACC ACAACCACAACCACCAACAATTCAGGAGCCAGTTCAGTTGGGAGATGTTACCGAAGAAGAATTGAGAGCTTATGATGGTTCAGATCCTAATAAGCCTCTT CTCATGGCTATCAAAGGCAAGATCTATGATGTCTCTCGCTCCAGGATGTTTTATGGTCCTGGTGGTCCATATGCATTGTTTGCTGGAAGGGAAGCTAGCA GGGCCTTAGCACTCATGTCTTTTGACCCCCGAGATCTTAATGGGAACCTTGAAGGCTTAAGTGAACCTGAGCTTGAAGTTTTACAGGACTGGGAATATAA ATTCATGGAAAAATATGTGAAGGTCGGGCAGCTTGTGGGCACTGATCAAGCTGTTAATGGAGGTGATGTCCAAGAGAGTGAGAAACATGACTGA
AA sequence Show only first row Show all	>Potri.015G125100.1 pacid=42776459 polypeptide=Potri.015G125100.1.p locus=Potri.015G125100 ID=Potri.015G125100.1.v4.1 annot-version=v4.1 MGLYATAMETMEAYTGLSPAAFFTIAAVMVVVYKIVCSMFVDPEEFDKKPINASGSIATNQPPPPQPQPQPPTIQEPVQLGDVTEEELRAYDGSDPNKPL LMAIKGKIYDVSRSRMFYGPGGPYALFAGREASRALALMSFDPRDLNGNLEGLSEPELEVLQDWEYKFMEKYVKVGQLVGTDQAVNGGDVQESEKHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G125100 [exp]	0	1	Pt-MP2.1
AT1G19020			unknown protein		Potri.014G153900 [exp]	8.77	0.7304
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	10.19	0.8148	FAH1.3
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.019G095700 [exp]	13.60	0.7633
AT4G16380			Heavy metal transport/detoxifi...		Potri.016G006700 [exp]	14.28	0.7276
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	16.00	0.7946
					Potri.016G141900 [exp]	31.40	0.7069
AT4G35630		PSAT	phosphoserine aminotransferase...		Potri.005G099900 [exp]	33.49	0.7046
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	33.70	0.7700	CAld5H/F5H4,Pt-FAH1.4
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	34.07	0.7409
AT4G22758			unknown protein		Potri.003G116200 [exp]	34.20	0.7024

Compare expression of checked genes

Potri.015G125100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.