Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05010 775 / 0 clathrin adaptor complexes medium subunit family protein (.1.2) AT5G40855 66 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125500 [exp] 949 / 0 AT5G05010 740 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G293150 [exp] 124 / 4e-34 AT5G05010 68 / 1e-14 clathrin adaptor complexes medium subunit family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017131 [exp] 851 / 0 AT5G05010 759 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2) Lus10018321 [exp] 778 / 0 AT5G05010 687 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [poplar] [flax] Cargo_bd_muHD PF00928 [poplar] [flax] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Potri.015G125400.1 pacid=42776346 polypeptide=Potri.015G125400.1.p locus=Potri.015G125400 ID=Potri.015G125400.1.v4.1 annot-version=v4.1 ATGGTTGTGCTTGCGGCTTCTATAGTGAGCAAGAATGGTAAAGTGCTTGTTTCGAGGCAGTTTGTGGACATGTCTCGGATAAGAATTGAAGGTCTCCTTG CTGCTTTTCCCAAGTTGATAGGGTCTGGAAAGCAGCATACTTATGTTGAGACTGAGAATGTGCGTTATGTTTACCAGCCAATAGAGGCTATGTACTTGCT GCTTGTTACGAATAAACAGAGCAACATTCTTGAAGATTTGGACACTCTGAGGCTGCTCTCTAAACTGGTACCTGAGTATACCATGTCTCTTGACGAAGAG GGTATTTGTCAAACAGCTTTTGAGCTGATCTTTGCTTTTGATGAGGTTATCTCTCTTGGGCACAAGGAAAATGTTACTGTTGCCCAGGTTAAGCAGTACT GTGAGATGGAGAGTCATGAAGAGAAATTGCACAAGCTGGTATTGCAGAATAAGATTGATGAGACCAAGCGTAGAATGAAGGAAGAAGCTAGTAAGATTGA CCAAATGAAGATTGAAAAGAATAGAGGTAATAAAGGAGGTTTTATGTCTTCAATGGGCTCTGGAAGAATTGAGAGCAGCTTTAATGATATGAGCATTTCC AGTGGCGGAGGAGGTGGTTTTGGAAGTGGATCTGGGTTTGGATTGACCAGTGATGTTGACTCATTTTCCAGCAAGCCTAAAGTTCGTCAACCTTCATCTG CCACTGCTCCTCCCAAAGGCCTTGGCATGAAGCTCGGCAAAACCCAAAGGACAAACCAGTTTTTGGAATCCTTGAAAGCAGAAGGTGAAATGATCGTTGA AGATGTGCAGCCATCAAAGTCAACCCAGTATACATCAGCTGCTCAAAAACTAACTGATCCTGTCACTTTGACTGCTGAGGAGAAACTCAATGTCACTCTA AAACGGGATGGTGGAATGAGTCACTTTGATGTTCAAGGGCATTTATCACTTCAAATTCTTAACCAAGAAGACGGGCTCATCCAAGTTCAGATTGAAACTG GGGGGAATCCAGGTGTCATTTTCAAGACACATCCTAACGTGAACAAAGAATTATTTGCTAATGAAAACATTTTGGGCTTGAGGGATCCCAGCAGACCTTT CCCCGCTTGTCAAACTGGGGATGCAGGTGTTGGTCTTTTGAAGTGGAGAATGCAAAGTGTTGATGAGTCAATGGTGCCCTTGACAATCAATTGCTGGCCA TCTGAGTCTGGAAATGAAACATATGTCAGCATCGAGTATGAAGCGTCATCCATGTTTGATCTACGAAATGTTGTGATCGCAGTTCCTCTACCAGCCCTTC GAGAGGCACCAAATGTTAGGCAGATTGATGGGGAATGGAAGTACGACGCAAGAAATTCCATCCTAGAATGGTCCATTCTTCTCATTGATAACTCAAACCG CAGTGGATCAATGGAGTTTGTTGTGCCATCAGGAGACTCATCGGCATTCTTCCCCATTACTGTTCAGTTTTCAGCCACTAGCACATACAGTGAGCTAAAG GTTGCCAATATCCTGCCCCTGAAAGGTGGAGCTCCTCCAAAGTTTTCCCAGAGGACTCAATTGATCACAGAGAATTACCAAGTAGTCTGA
AA sequence Show only first row Show all	>Potri.015G125400.1 pacid=42776346 polypeptide=Potri.015G125400.1.p locus=Potri.015G125400 ID=Potri.015G125400.1.v4.1 annot-version=v4.1 MVVLAASIVSKNGKVLVSRQFVDMSRIRIEGLLAAFPKLIGSGKQHTYVETENVRYVYQPIEAMYLLLVTNKQSNILEDLDTLRLLSKLVPEYTMSLDEE GICQTAFELIFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVLQNKIDETKRRMKEEASKIDQMKIEKNRGNKGGFMSSMGSGRIESSFNDMSIS SGGGGGFGSGSGFGLTSDVDSFSSKPKVRQPSSATAPPKGLGMKLGKTQRTNQFLESLKAEGEMIVEDVQPSKSTQYTSAAQKLTDPVTLTAEEKLNVTL KRDGGMSHFDVQGHLSLQILNQEDGLIQVQIETGGNPGVIFKTHPNVNKELFANENILGLRDPSRPFPACQTGDAGVGLLKWRMQSVDESMVPLTINCWP SESGNETYVSIEYEASSMFDLRNVVIAVPLPALREAPNVRQIDGEWKYDARNSILEWSILLIDNSNRSGSMEFVVPSGDSSAFFPITVQFSATSTYSELK VANILPLKGGAPPKFSQRTQLITENYQVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	0	1
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	1.41	0.9729	COPE2.1
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	1.41	0.9760
AT3G12110		ACT11	actin-11 (.1)		Potri.008G055500 [exp]	3.00	0.9703	ACT4,Pt-PEAC14.2
AT3G12110		ACT11	actin-11 (.1)		Potri.010G204300 [exp]	3.87	0.9700	ACT5,Pt-PEAC14.3
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	4.00	0.9701
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	4.12	0.9516
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	4.24	0.9698
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Potri.001G247800 [exp]	4.24	0.9504	Pt-UCP2.1
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	4.58	0.9645
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	4.89	0.9601

Compare expression of checked genes

Potri.015G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.