Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23260 191 / 2e-60 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G20240 139 / 8e-41 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT3G57230 131 / 2e-37 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G45660 129 / 7e-37 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G51870 125 / 3e-35 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT1G24260 125 / 6e-35 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 125 / 6e-35 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G22950 124 / 1e-34 MADS AGL19 AGAMOUS-like 19 (.1) AT3G58780 124 / 2e-34 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G37940 123 / 2e-34 MADS AGL21 AGAMOUS-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125600 [exp] 393 / 3e-140 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.007G073000 [exp] 207 / 4e-67 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.005G182200 [exp] 147 / 1e-43 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.015G134800 [exp] 143 / 2e-41 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.002G079000 [exp] 139 / 2e-40 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G151700 [exp] 130 / 4e-37 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.012G132600 [exp] 130 / 5e-37 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.014G074200 [exp] 129 / 2e-36 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.002G109601 [exp] 127 / 1e-35 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010184 [exp] 190 / 5e-60 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10017388 [exp] 189 / 1e-59 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10029719 [exp] 137 / 2e-39 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10042749 [exp] 132 / 7e-38 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10021140 [exp] 129 / 5e-36 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 128 / 1e-35 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10006715 [exp] 127 / 1e-35 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10026679 [exp] 126 / 2e-35 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 124 / 9e-35 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 124 / 2e-34 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.015G125501.1 pacid=42776493 polypeptide=Potri.015G125501.1.p locus=Potri.015G125501 ID=Potri.015G125501.1.v4.1 annot-version=v4.1 ATGGCCAGAGGAAAGATAGCGATAACTAGGATTGAGAACCGAACAGCCAGGCAAGTCACCTTTTCCAAACGCAGGGTAGGGCTTTTCAAGAAGACCCATG AGCTCTCTGTGCTCTGTGATGCTGAAATAGGACTCATCGTCTTCTCAAGCAATGGGAATCTTTCTGAATTCTGCAGTGAGTCGTCCAGCATACCACACAT CATCAAAAGGTATGAAATTTCTAAAGGAATGCGCGTTTCAGAAAGCAATGACTCGGAACAAATCCTGAAGGAGTTGAAAAGAATCAGGAAAGAGACAGAT GATCTTCAGTTGAGTATGCGATGCTACAAAGGCGAAAGCTTGAGTTCCTTGCACTATGAGGATCTGGTTGAGCTTGAAAAGCAGCTGGAGTGCTCAGTGA ACAAGGTTCGAGCTCGGAAGTTTGAGCTTCTGCAACAGCAGGTGGACAATCTGCGAAGAAAGGAGAAAATGCTGGATGTGGAAAATCAACAAATACAGTA CCATCTTCATCAAGTCGCAACATTGGAGCAGCAACATGCAGCTGTAGCAACGGTGAAGCCAGAGGAACAGCAGAGAATGCTCGAGGAATTCCAGTTTTTT GGTGATGAACAGCCTATCAGTAATCTGCTACAGCTTGCTCCTCTCCCTCCACAGTTCCAACCTTGCCGTGTCCAGCCTACACAGCCCAACCTTCAAGATT CCAGTCTCTCCATCCCTGATCCCTCCAATTACATGTGGCAACACAATGCATGCACTAGCCTATTCCATTAG
AA sequence Show only first row Show all	>Potri.015G125501.1 pacid=42776493 polypeptide=Potri.015G125501.1.p locus=Potri.015G125501 ID=Potri.015G125501.1.v4.1 annot-version=v4.1 MARGKIAITRIENRTARQVTFSKRRVGLFKKTHELSVLCDAEIGLIVFSSNGNLSEFCSESSSIPHIIKRYEISKGMRVSESNDSEQILKELKRIRKETD DLQLSMRCYKGESLSSLHYEDLVELEKQLECSVNKVRARKFELLQQQVDNLRRKEKMLDVENQQIQYHLHQVATLEQQHAAVATVKPEEQQRMLEEFQFF GDEQPISNLLQLAPLPPQFQPCRVQPTQPNLQDSSLSIPDPSNYMWQHNACTSLFH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.015G125501 [exp]	0	1
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.010G064000 [exp]	2.23	0.9390	Pt-MYB305.2
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076700 [exp]	2.23	0.9000
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111800 [exp]	3.74	0.9152
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.013G045200 [exp]	4.24	0.8913
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G115600 [exp]	4.58	0.8791
					Potri.017G142966 [exp]	5.47	0.7929
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180200 [exp]	6.24	0.9095
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180000 [exp]	7.21	0.9082
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075400 [exp]	8.66	0.8096
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G118000 [exp]	9.48	0.8700

Compare expression of checked genes

Potri.015G125501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.