Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19950 327 / 5e-112 unknown protein AT1G31130 327 / 6e-112 unknown protein AT5G44860 315 / 6e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125800 [exp] 400 / 6e-141 AT5G44860 396 / 4e-139 unknown protein Potri.007G105600 [exp] 178 / 1e-53 AT4G19950 179 / 7e-54 unknown protein Potri.005G186200 [exp] 172 / 4e-51 AT4G19950 185 / 3e-56 unknown protein Potri.007G105700 [exp] 162 / 2e-47 AT4G19950 182 / 4e-55 unknown protein Potri.002G074200 [exp] 114 / 4e-29 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 108 / 3e-27 AT4G19950 133 / 3e-36 unknown protein Potri.008G091500 [exp] 45 / 3e-05 AT1G26650 401 / 3e-140 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017130 [exp] 309 / 1e-104 AT4G19950 410 / 1e-144 unknown protein Lus10018322 [exp] 307 / 1e-103 AT4G19950 417 / 3e-147 unknown protein Lus10036220 [exp] 177 / 1e-54 AT5G44860 265 / 3e-89 unknown protein Lus10038358 [exp] 160 / 2e-49 AT4G19950 183 / 1e-58 unknown protein Lus10018940 [exp] 162 / 5e-47 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 151 / 5e-43 AT1G31130 228 / 1e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G125600.1 pacid=42775139 polypeptide=Potri.015G125600.1.p locus=Potri.015G125600 ID=Potri.015G125600.1.v4.1 annot-version=v4.1 ATGGATCTTGAAACAGAAGAGCTACAATTCTTTACCATACCAGAAATCTTGAAAGAATCCATTTCAATCCCAAAACAATCACCAAAAACTTTTAAGCTAA TCACCCTTGCTTTAATCTTTCCTTTATCTTTTGCAATCTTGGCTCACTCTCTTTTTACTCATCCTCTTTTTTCACAAATTCAAGATCACCCATCAAGGCA ACACACTCATCAATGGACCCTTCTTTTAGTTTTTCAATTCTTCTATCTAATCTTTTTATTTGCCTTCTCTCTTTTATCAACTGCTGCTGTTGTTTTCACT GTTGCTTCTCTTTACACTTCAAAGCCTGTTTCTTTTTCCTCTACAATGTCTGCCATCCCTCGGGTTTTTAAGCGTTTGTTTATGACGTTCTTGTGGGTTT CTCTGTTAATGTTGGTTTATTATTCTGTTTTCTTTCTGTTCTTGGTGATTTTGATTATCGGTATTGATATTCAGAATGCCCTTTTGGTTTTGTTCTCTTT GGTGGTGATTGGTGTGCTTTTCTTGGTTGTTCATGTTTATATTACTGGACTTTGGCATTTGGCTAGTGTGGTTTCTGTTTTAGAGCCAATTTATGGATTT GCTGCTATGAAAAAGAGTTATGAGTTGTTGAAAGGGAAGATTCGTGTGGCTGGTGTTCTTGTTTTCGGGTACTTGTCTATTTGTGGATTGGTGTCTGTGA TTTTTTCGACTGTTGTGGTTCATGGTGGAGATAATCATGGAGTGTTTACAAGGATTATTGTTGGTGGGTTTTTAGTTGGGGTTTTGGTGATTGTGAATTT GGTGGGATTGTTGGTGCAAAGTGTGTTTTATTACGTTTGCAAGAGCTATCATCATCAAGGGATTGATAAGACTGCCTTACATGAGCATCTTGGTGGGTAT CTTGGAGAGTATGTGCCTTTGAAATCCAGCATTCAGATGGAGAATTTGGATGCTTGA
AA sequence Show only first row Show all	>Potri.015G125600.1 pacid=42775139 polypeptide=Potri.015G125600.1.p locus=Potri.015G125600 ID=Potri.015G125600.1.v4.1 annot-version=v4.1 MDLETEELQFFTIPEILKESISIPKQSPKTFKLITLALIFPLSFAILAHSLFTHPLFSQIQDHPSRQHTHQWTLLLVFQFFYLIFLFAFSLLSTAAVVFT VASLYTSKPVSFSSTMSAIPRVFKRLFMTFLWVSLLMLVYYSVFFLFLVILIIGIDIQNALLVLFSLVVIGVLFLVVHVYITGLWHLASVVSVLEPIYGF AAMKKSYELLKGKIRVAGVLVFGYLSICGLVSVIFSTVVVHGGDNHGVFTRIIVGGFLVGVLVIVNLVGLLVQSVFYYVCKSYHHQGIDKTALHEHLGGY LGEYVPLKSSIQMENLDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31130			unknown protein		Potri.015G125600 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	1.73	0.8500
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G145516 [exp]	1.73	0.8395
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	5.19	0.8222
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	6.48	0.8299
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Potri.008G080700 [exp]	6.48	0.8174
AT2G35736			unknown protein		Potri.001G123000 [exp]	16.06	0.8434
AT5G25360			unknown protein		Potri.001G192700 [exp]	27.62	0.7624
AT1G03030			P-loop containing nucleoside t...		Potri.005G218700 [exp]	29.32	0.8360
AT3G25120			Mitochondrial import inner mem...		Potri.002G246000 [exp]	29.41	0.7476
AT1G15890			Disease resistance protein (CC...		Potri.003G062100 [exp]	39.26	0.8313

Compare expression of checked genes

Potri.015G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.