Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58480 90 / 1e-18 calmodulin-binding family protein (.1) AT2G20142 87 / 2e-18 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G57010 88 / 3e-18 calmodulin-binding family protein (.1) AT3G52870 85 / 2e-17 IQ calmodulin-binding motif family protein (.1) AT3G13600 85 / 3e-17 calmodulin-binding family protein (.1) AT4G33050 83 / 4e-17 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT2G26190 84 / 8e-17 calmodulin-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226500 [exp] 91 / 1e-19 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.018G061901 [exp] 91 / 3e-19 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 91 / 4e-19 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G197500 [exp] 91 / 6e-19 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 89 / 3e-18 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 87 / 6e-18 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.001G006200 [exp] 87 / 7e-18 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G147900 [exp] 87 / 1e-17 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 86 / 2e-17 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003257 [exp] 95 / 2e-20 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 94 / 5e-20 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10013526 [exp] 91 / 4e-19 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 89 / 2e-18 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10025173 [exp] 87 / 8e-18 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 87 / 1e-17 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 86 / 2e-17 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 86 / 2e-17 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 84 / 5e-17 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 84 / 8e-17 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.015G125950.3 pacid=42776090 polypeptide=Potri.015G125950.3.p locus=Potri.015G125950 ID=Potri.015G125950.3.v4.1 annot-version=v4.1 ATGAGTGAAGCTGCCGCAATTAGGATTCAAAAACACTACAGAGGTTTTCGGACCAGACGAAACCTAGCAGACAGTATAATTGCGGCTGAGTTACTATGGC AAACGACCCTGTCTGATACCCAAAAAGTGGGTAAACTTGCAATAACTGTAAACATCGAGAGTGAAAAACATATCGTGTCACTCTTGAAATGGTTAGATAC AAGATTTAACAAGTATGGTAAGCTATCCAGCGATCAACTAGCCCTACTACATTGTTGGGAAACTATTGATCCACGACTTCGTTATTCTTGGAATTCACAT TTTTTTTATCTGATCTGGGGCGATCAATGTTTCTTGGGGAGTTCGAAGTTTGACTCATATAAAATTGGTGATCTAAAGAGAAGAGAATCATTATTCACCA CTGGAAAGCCAACATCTGTTCAACTAAGAATGAATACGGCATCATCAACTCAGCATTGGATATCTGAGCTTACGAAGGCTTGGAAGACCTGGAAAGGAGC CTTGCAACGTTGGCTGGAAGTTATTGATCCACGCCATCGGGTTGGACGCAATTTAAACTTTTACTTTCAGATGTGGATGACTAGCAGTGGTGGCCAACCT TTCTTCTACTGGTTGGACGTTGGCGATGGAAAAACAGTAGAGCATCTGGAATGCTCAAGGGAAAAGCTGCGTCACGAACGCAATACATATCTTGAACTAG TAAGCAAATCGGAGGCAGTTCAATCCCTTATGTCCCTTGTGCTCAGGAGTGAGAGCAACACCGAGAAAGATATAAATAACAATCAACGAGAACATGACCG GGCATATGGATTCAATCAACAGGCAAGCAATTCGGAGGCAGTTGAGTCCCATGTGTCCTTAATGCCCAGGAGTGAGAGGGACACCGAGGAAGATATAAAT AACGATCAACGAGAACATGACCAGGCAGATGGATTCGATCGACAGGCAAGCAATTCGGAGGCAGTTGAGTCCCCTGCGTCCTTGGTGCCCAGGAGTGAGA GCAACACCGAGGACGATATAAATAACAATCAACGAGAACATGACCAGGTGGATGGATTCGATCGACAGGCAAGCAATTCGGATGTAGTTGAACCCCCTGC GTCCTTGGTGCCATCTAAAGGTCAAAATCACCAGACAGTATTACAAATTGAAGGTCAAAATCACCAGACAGTATTACAGATTGATTTAAAAAACTATAAA CGAACACACAACGGGCCGGCAGATGGATTCAATCAAAAGGATCTATTGAGAAGAATCTTCTATGCTATGAACCTTCTGTTTGAGATTGCAACTGCGGTTC TTGATTACTTGTCTTCTCAGCAGCGTCAACCCCGGTATGCGCTATGTGGTATGATACTGTCAATCACTGTCATGGCCATCTCCTTAATTCAGCTTGCTTA CACCGGTGGAAAGGAAGAGGTTAGTTGGCAGTGGAAGGGCTGGATACCTTGGTTTTATCATCGAGCTCCACCTCACAAGCTTTTCGGAAATCCTGTTCAC ATTCTTGAATTGCTTTTCTCCGTCTCTCAATGTGTTTTTGCAATAATTGCCTACCACTATTTGTCTCGAGACCAAAACAATCCTACACAGTTTTCTATTT ATCCTATAGCCTTTGCTTTTTGTTTGTTGTGTCTCAGTTTTAGACGACGCGAGCCATGA
AA sequence Show only first row Show all	>Potri.015G125950.3 pacid=42776090 polypeptide=Potri.015G125950.3.p locus=Potri.015G125950 ID=Potri.015G125950.3.v4.1 annot-version=v4.1 MSEAAAIRIQKHYRGFRTRRNLADSIIAAELLWQTTLSDTQKVGKLAITVNIESEKHIVSLLKWLDTRFNKYGKLSSDQLALLHCWETIDPRLRYSWNSH FFYLIWGDQCFLGSSKFDSYKIGDLKRRESLFTTGKPTSVQLRMNTASSTQHWISELTKAWKTWKGALQRWLEVIDPRHRVGRNLNFYFQMWMTSSGGQP FFYWLDVGDGKTVEHLECSREKLRHERNTYLELVSKSEAVQSLMSLVLRSESNTEKDINNNQREHDRAYGFNQQASNSEAVESHVSLMPRSERDTEEDIN NDQREHDQADGFDRQASNSEAVESPASLVPRSESNTEDDINNNQREHDQVDGFDRQASNSDVVEPPASLVPSKGQNHQTVLQIEGQNHQTVLQIDLKNYK RTHNGPADGFNQKDLLRRIFYAMNLLFEIATAVLDYLSSQQRQPRYALCGMILSITVMAISLIQLAYTGGKEEVSWQWKGWIPWFYHRAPPHKLFGNPVH ILELLFSVSQCVFAIIAYHYLSRDQNNPTQFSIYPIAFAFCLLCLSFRRREP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.009G086100 [exp]	3.87	0.8033
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	7.87	0.8215
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	10.58	0.7736
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.016G105900 [exp]	11.22	0.8192
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.012G079500 [exp]	11.48	0.7825
AT3G63380			ATPase E1-E2 type family prote...		Potri.002G047500 [exp]	16.15	0.7884
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019500 [exp]	18.97	0.7696
					Potri.010G125900 [exp]	19.44	0.7513
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	19.89	0.8009
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G112700 [exp]	22.36	0.7538

Compare expression of checked genes

Potri.015G125950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.