Plant FIBer expression Database

CBP.1 (Potri.015G126800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CBP.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62390 311 / 1e-102 ATBAG7 BCL-2-associated athanogene 7 (.1)
AT3G29310 51 / 7e-07 calmodulin-binding protein-related (.1)
AT2G46240 49 / 7e-06 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G126000
[exp]
603 / 0 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1)
Potri.017G091100
[exp]
62 / 2e-10 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1)
Potri.002G166300
[exp]
56 / 4e-08 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031147
[exp]
364 / 9e-124 AT5G62390 331 / 3e-110 BCL-2-associated athanogene 7 (.1)
Lus10031724
[exp]
363 / 2e-123 AT5G62390 334 / 1e-111 BCL-2-associated athanogene 7 (.1)
Lus10038064
[exp]
68 / 5e-12 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1)
Lus10026469
[exp]
64 / 6e-11 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
PFAM info
Representative CDS sequence
>Potri.015G126800.1 pacid=42776444 polypeptide=Potri.015G126800.1.p locus=Potri.015G126800 ID=Potri.015G126800.1.v4.1 annot-version=v4.1
ATGAGCCGATTTAGAAGAATCGAAATCTTTGAGCCTCACTATGCTCCTGTGTTCCTCAGAGAAGCCTCCGTGTTCACTTCGAAAACACTCGCTTTCCCCT
CCTTTGAAGAACCTGCGGAACTATCTTTTGCTGCCCTCGATCTCTTGCACTTAAAACCTAGCTCTCTCGAGTGTTTTTATACGGCGACGGATCTGGTTAA
GACGCCGTTGTTTTGCCCTTCCAAGAGTGTTCTTGACCGATTTGAGACTGACTTGCGCTTGCAGACTCTTTCTGACCGCGTCAGTGAGCTCGAGTCACAG
TTTGACCGCCTTGTCAACGCGAAGATCAACGGCGGAAGTGGTGCTGAGAGGAAATACACGTGGACTGCGGAGATTAAAGGACCGGTGACGGAGAGGAAGT
ATAAATGGACGGCGGAGATCAAAGGAGGAGAGGAGGAGAAGAAGAAGAAGAAGAAAGAAGAGCAGGTTAAGAATTATAAATGGACGGCTGAGATTAAAGG
AAAGGGGGAGGAAGAGATTCCGATGTCACGGAAGTATACTTTTGAAACATCAAGTGGATTTGCAGGTGAGGGTAGCAAAGAAGAGAAGAAGGAGAATGAG
AAGAAGAAAGAGGGTAAGAAAGAGAAGAAAGGAGCGTGCGCCACGCGACTTGTTGAAATAGAAGATTACCCTGATCATGGAGCTGTTGTTTTACGAAAGG
CATTTGCGAAGAGGGCTGGAGTGGTGGAGAAGAGAAAGGGAAAGAAGAAGGAATTGTCTCCGCAAGATGCAGCATTGTTGATTCAGGTGACATTTAGGAC
TTACTTGATTAGGAGATCGCAGGCGCTTCGTGCACTTAGAGAGTTGGCGATTGCGAAAGCAAAGTTGAAGGAGCTTAGAGCTTTGTTTAATAACTTTTCG
TATAGGCGTCATCTTGCTCGTGATGCTGAGGAGAGGCAGAGGTTTTCAGAGAAAATTATTGTGCTGCTGCTCACTGTTGATGCCATTGAGGGAGCTGAGC
TAATGGTTCGATCTGCAAAGAGGTCAATGGTGGATGAGCTGGAGGCAATGCTGGATGTGGTCGACCCCCAACCTGCCGGTAGATCACTTTCCATGAGAAG
ACGGACATTTGATATGCCTGATGGTGTCATTCATAAGGAAATTGCAGAAAGTGTGGCCCAGGTTGTCCAAATGCTTGACAATGAAGAGAATGGCACCAAC
ACCTTTGAGGCATGTTTGTAA
AA sequence
>Potri.015G126800.1 pacid=42776444 polypeptide=Potri.015G126800.1.p locus=Potri.015G126800 ID=Potri.015G126800.1.v4.1 annot-version=v4.1
MSRFRRIEIFEPHYAPVFLREASVFTSKTLAFPSFEEPAELSFAALDLLHLKPSSLECFYTATDLVKTPLFCPSKSVLDRFETDLRLQTLSDRVSELESQ
FDRLVNAKINGGSGAERKYTWTAEIKGPVTERKYKWTAEIKGGEEEKKKKKKEEQVKNYKWTAEIKGKGEEEIPMSRKYTFETSSGFAGEGSKEEKKENE
KKKEGKKEKKGACATRLVEIEDYPDHGAVVLRKAFAKRAGVVEKRKGKKKELSPQDAALLIQVTFRTYLIRRSQALRALRELAIAKAKLKELRALFNNFS
YRRHLARDAEERQRFSEKIIVLLLTVDAIEGAELMVRSAKRSMVDELEAMLDVVDPQPAGRSLSMRRRTFDMPDGVIHKEIAESVAQVVQMLDNEENGTN
TFEACL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62390 ATBAG7 BCL-2-associated athanogene 7 ... Potri.015G126800
[exp]
0 1 CBP.1
AT1G12680 PEPKR2 phosphoenolpyruvate carboxylas... Potri.007G112400
[exp]
3.16 0.7837
AT2G36985 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL f... Potri.010G226250
[exp]
3.46 0.8043
AT1G26100 Cytochrome b561/ferric reducta... Potri.008G115200
[exp]
4.47 0.8397
AT5G49690 UDP-Glycosyltransferase superf... Potri.017G042800
[exp]
9.16 0.8040
AT1G76740 unknown protein Potri.002G066450
[exp]
10.09 0.7666
AT5G06710 HD HAT14 homeobox from Arabidopsis thal... Potri.016G058600
[exp]
12.24 0.7931
Potri.017G119750
[exp]
14.69 0.8071
AT5G45480 Protein of unknown function (D... Potri.006G013300
[exp]
16.52 0.7896
AT5G43700 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible... Potri.005G053800
[exp]
19.74 0.7588 Pt-IAA8.1
AT3G42860 zinc knuckle (CCHC-type) famil... Potri.001G318100
[exp]
29.12 0.7854

Potri.015G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.