Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62660 712 / 0 Glycosyl hydrolases family 32 protein (.1) AT1G12240 704 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT3G13790 467 / 3e-158 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 456 / 1e-153 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G52600 440 / 1e-147 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13784 416 / 3e-138 ATCWINV5 cell wall invertase 5 (.1) AT2G36190 415 / 8e-138 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 409 / 6e-136 ATCWINV6 6-&1-fructan exohydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 751 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 729 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.016G077400 [exp] 478 / 1e-162 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227500 [exp] 476 / 1e-161 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 469 / 3e-159 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 459 / 4e-155 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 455 / 2e-153 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031144 [exp] 830 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 767 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10028922 [exp] 753 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 738 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 731 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 700 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 517 / 4e-178 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10037633 [exp] 472 / 3e-160 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10008392 [exp] 466 / 2e-157 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 441 / 4e-148 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal
Representative CDS sequence Show only first row Show all	>Potri.015G127100.1 pacid=42776646 polypeptide=Potri.015G127100.1.p locus=Potri.015G127100 ID=Potri.015G127100.1.v4.1 annot-version=v4.1 ATGGATACTAACCCCTCCCATACCTCTTCTGACCCACCATACACTCCCTTGCTAGACAACCCTTCTCCGGCAAGAATCCGGCGACCCTTTAATGGTTTTG CTGCGATACTCGCCTCACTCATTTTCTTGCTATCTTTAGTCGCATTAATCATTAACCAAAGCCAAGAGTCATTACCTGAGCAAAACCAAAACCGGTCACC TTCAACGCCAAGACCTACAGAGTCATTTTCCAAGCCAGAGCCAAGAGGAGTGGCTCAAGGGGTATCACCAAAGTCAAATCCATCATTTTTCAGTGATAAG GTCTCCTATAATTGGACAAATGCTATGTTTTCATGGCAAAGAACTGCCTACCACTTTCAACCTGAGAAGAATTGGATGAATGATCCTGATGGTCCGTTGT TTCACAAGGGATGGTACCATCTATTCTACCAATACAATCCTGATTCAGCCGTGTGGGGCAACATTACATGGGGCCATGCCGTATCAACGGACCTGATTCA TTGGCTTTACCTCCCGTTCGCCATGGTCCCGGATCATTGGTACGATATAAATGGCGTGTGGACCGGGTCTGCCACGCTTCTTCCTGATGGTCAGATCATG ATGCTCTATACCGGGTCAACTAACGAGTCAGTACAGGTCCAAAATCTTGCGTACCCTGCTAATCTATCCGATCCTCTCCTTATTGACTGGGTTAAGTATC CGAATAATCCGGTTATAACACCACCAAACGGGACCGAGACTGACGAATTTAGGGACCCGACAACAGCATGGATGGGACCCGATGGGACATGGCGGATCAC AATCGGGTCAAGACATAATAAAAGCATTGGCATTTCGCTTGTGTACCAAACCTCCAATTTTACAACCTACGAGTTATTGGAAGGGGTCTTGCATGCGGTC CCGGGTACGGGTATGTGGGAATGTGTGGATTTTTACCCGGTTGCAATAAATGGGTCAACTGGATTGGATACTTCGGCTTATGGAGCGGGTATCAAACACG TGCTAAAGGCTAGTTTGGATGACACAAAGAGGGACCACTATGCAATTGGGGTTTATGACCCTGTAACCGATAAATGGACCCCGGATAATCCGAAGGAGGA TGTGGGCATTGGGTTACAGGTGGATTATGGAAGGTATTATGCATCAAAAACGTTTTATGACCAGAACACGCAAAGGAGGATCTTATGGGGCTGGATTAAT GAAACTGATACTGAAACTGATGATCTTGACAAGGGATGGGCCTCTGTTCAGACTATTCCAAGGAAGGTGTTGTATGATAACAAGACTGGAACTAATATAC TTCAATGGCCGGTGGAAGAGATTGAGAGCTTGAGGTTGAGGAGCACAGATTTTACAGAGATTGTGGTTGGACCTGGTTCGGTTGTGCCACTTGACATAGG ACAGGCCACACAGCTAGACATATTCGCTGAGTTTGAAGTAGAGATAATATCAGAGACAAAACATGAAAAATATGGTTGCAGTGGTGGTGCTGTGGACAGG AGTGCTTTGGGACCATTTGGTCTTCTAGTCGTAGCAGACCAAACACTTTCAGAGCTTACCCCTATATTTTTCCGGCCAGTTAATACAACTGAGGGCATTG TCGAAACTTATTTCTGTGCTGATGAAACAAGGTCATCAAAAGCTTCAGACGTTTACAAACAAGTTTATGGAAGCACAGTTCCTGTGTTCACAGACGAAAA GTTTCAAATGAGGGTATTGGTTGATCATTCAATTGTTGAGAGTTTTGCTCAAGGAGGAAGAAGAGTGATAACATCAAGAATTTATCCAACAAAAGCAATT TACGGGGATGCAAGGCTGTTCTTGTTTAACAATGCAACTGGGGTGAACGTTAAGGCCACACTCAAGATTTGGGAATTGAATTCTGCATTTATCCATCCTT TCCTATTTGACCAAAATTAG
AA sequence Show only first row Show all	>Potri.015G127100.1 pacid=42776646 polypeptide=Potri.015G127100.1.p locus=Potri.015G127100 ID=Potri.015G127100.1.v4.1 annot-version=v4.1 MDTNPSHTSSDPPYTPLLDNPSPARIRRPFNGFAAILASLIFLLSLVALIINQSQESLPEQNQNRSPSTPRPTESFSKPEPRGVAQGVSPKSNPSFFSDK VSYNWTNAMFSWQRTAYHFQPEKNWMNDPDGPLFHKGWYHLFYQYNPDSAVWGNITWGHAVSTDLIHWLYLPFAMVPDHWYDINGVWTGSATLLPDGQIM MLYTGSTNESVQVQNLAYPANLSDPLLIDWVKYPNNPVITPPNGTETDEFRDPTTAWMGPDGTWRITIGSRHNKSIGISLVYQTSNFTTYELLEGVLHAV PGTGMWECVDFYPVAINGSTGLDTSAYGAGIKHVLKASLDDTKRDHYAIGVYDPVTDKWTPDNPKEDVGIGLQVDYGRYYASKTFYDQNTQRRILWGWIN ETDTETDDLDKGWASVQTIPRKVLYDNKTGTNILQWPVEEIESLRLRSTDFTEIVVGPGSVVPLDIGQATQLDIFAEFEVEIISETKHEKYGCSGGAVDR SALGPFGLLVVADQTLSELTPIFFRPVNTTEGIVETYFCADETRSSKASDVYKQVYGSTVPVFTDEKFQMRVLVDHSIVESFAQGGRRVITSRIYPTKAI YGDARLFLFNNATGVNVKATLKIWELNSAFIHPFLFDQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62660			Glycosyl hydrolases family 32 ...		Potri.015G127100 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.014G083900 [exp]	5.29	0.9211	TAN1.1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	8.48	0.9303
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	9.48	0.9206
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	15.00	0.9105
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	15.74	0.9124
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.009G103800 [exp]	20.07	0.9041
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	25.00	0.8851
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	26.83	0.8749	ATCSLA02.1
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171268 [exp]	29.46	0.8819
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	30.03	0.8858

Compare expression of checked genes

Potri.015G127100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.