Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12260 378 / 3e-130 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT1G62700 347 / 4e-118 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT2G18060 304 / 1e-101 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT4G36160 300 / 9e-100 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT5G62380 291 / 9e-97 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT5G66300 276 / 2e-91 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G71930 260 / 5e-85 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT2G46770 260 / 3e-84 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G32770 253 / 9e-82 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT3G61910 247 / 1e-79 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126500 [exp] 649 / 0 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.001G120000 [exp] 479 / 2e-170 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.003G113000 [exp] 479 / 2e-170 AT1G12260 439 / 3e-154 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.007G014400 [exp] 307 / 1e-102 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.005G116800 [exp] 300 / 7e-100 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.019G083600 [exp] 275 / 1e-90 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.013G113100 [exp] 269 / 2e-88 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G104800 [exp] 260 / 3e-84 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G176600 [exp] 256 / 2e-83 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032238 [exp] 384 / 2e-132 AT1G12260 432 / 6e-151 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10024601 [exp] 348 / 2e-118 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031721 [exp] 342 / 5e-117 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031142 [exp] 342 / 5e-117 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10041822 [exp] 280 / 4e-92 AT2G18060 352 / 3e-120 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10028372 [exp] 280 / 4e-92 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10017915 [exp] 269 / 1e-88 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10004338 [exp] 256 / 3e-83 AT1G62700 302 / 7e-101 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) Lus10017340 [exp] 255 / 6e-82 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10009939 [exp] 248 / 4e-81 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.015G127400.1 pacid=42775329 polypeptide=Potri.015G127400.1.p locus=Potri.015G127400 ID=Potri.015G127400.1.v4.1 annot-version=v4.1 ATGAATTCTTTTACACACGTTCCTCCTGGTTTTCGATTCCATCCTACCGATGAAGAACTTGTCCATTACTACCTTAGAAAAAAAGTAAATTCAAGAAGGA TTGACCTAGATGTCATTAAGGATGTCGAGCTTTACAAGATTGAGCCATGGGATCTTCAAGAACTGTGCCGAATAGGAACCGAGGAGCAAAATGAATGGTA CTTTTTTAGCCACAAAGATAAGAAGTATCCTACTGGGACTCGCACAAATAGAGCCACTGTTGCAGGATTTTGGAAAGCAACAGGTAGAGACAAGGCAATT TATTCGAAGCACGACTTGATCGGAATGAGGAAGACCTTAGTCTTTTATAAAGGTCGAGCTCCGAATGGACAGAAATCGGACTGGATTATGCATGAGTACA GACTTGAAACAGATGAAAATGGGACTCCACAGGAAGAAGGTTGGGTTGTGTGCAGGGTGTTCAAGAAGAGAATACCAACGATGCCAAAAGTGAGTGAGCA TGAATCAGTTTGCTGGTATGATGATCAAGTTGCATTCATGCATGACTTGGATTCACCAAAGCAAAACTTCCAGCCTGACTTAGGTTATCAATTCCCTTAC TCCTGCAAGAAAGAGCTGGATTTTCAGTACCAAATCCCTCATGATCACTTCCTCCAGCTCCCACTTCTACAAAGTCCTAAACTTCTGCAATCGGCTCCTA CATTAAGTTGCAATTCCATCAATGCTGCATATGGCCTAGACATAAACCAGACAAGCACTTTTCAATCCTCAACACTCACACAAGAAGATCACGTTCAACA AACACATGAGCAAAGATTTCCCACCATCTATGGTAACAACAACAGCAATCATGAGCAAGCAGTTGATCAAGTCACAGACTGGAGAGTGCTTGACAAATTT GTTGCTTCTCAATTGAGCCACGAAGATGTGATCAAGGAAACTAACCACCCAAATGCTAGCAACAACATTTTCAACACATCATCAGTCCACGCAGCAAACA TACTTGTTAGACACTTGAATAAGCAAGAAGCATCCGTGCAGGAAAACGCCTCGACGTCAACCTCCAGTTGTCAAATTGATCTATGGAAGTGA
AA sequence Show only first row Show all	>Potri.015G127400.1 pacid=42775329 polypeptide=Potri.015G127400.1.p locus=Potri.015G127400 ID=Potri.015G127400.1.v4.1 annot-version=v4.1 MNSFTHVPPGFRFHPTDEELVHYYLRKKVNSRRIDLDVIKDVELYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAI YSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRIPTMPKVSEHESVCWYDDQVAFMHDLDSPKQNFQPDLGYQFPY SCKKELDFQYQIPHDHFLQLPLLQSPKLLQSAPTLSCNSINAAYGLDINQTSTFQSSTLTQEDHVQQTHEQRFPTIYGNNNSNHEQAVDQVTDWRVLDKF VASQLSHEDVIKETNHPNASNNIFNTSSVHAANILVRHLNKQEASVQENASTSTSSCQIDLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.015G127400 [exp]	0	1
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.001G120000 [exp]	1.00	0.8426	NAC038
AT5G57670			Protein kinase superfamily pro...		Potri.018G096100 [exp]	5.29	0.8044
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	6.78	0.8377
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	9.32	0.8212
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	15.29	0.7827
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	17.49	0.7832
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	17.66	0.8040
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	19.00	0.7805	CLE12.1
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	21.56	0.7882
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	22.31	0.8174

Compare expression of checked genes

Potri.015G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.