Plant FIBer expression Database

PME.4 (Potri.015G127500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PME.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45220 573 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT3G47400 485 / 8e-167 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT5G51490 468 / 3e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT5G51500 464 / 1e-159 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT4G00190 429 / 9e-147 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1)
AT1G23200 431 / 2e-146 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT3G49220 422 / 3e-142 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT5G53370 416 / 6e-140 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
AT3G05620 406 / 8e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT4G02320 399 / 2e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G127700
[exp]
742 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.012G126800
[exp]
717 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.014G067100
[exp]
579 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.002G145500
[exp]
567 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.010G109400
[exp]
519 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.015G127800
[exp]
513 / 6e-179 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.012G126900
[exp]
484 / 1e-167 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.003G072800
[exp]
421 / 5e-142 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Potri.002G202500
[exp]
420 / 7e-142 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038917
[exp]
573 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10006103
[exp]
545 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10027202
[exp]
538 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10027206
[exp]
509 / 2e-177 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10031140
[exp]
454 / 2e-155 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10009110
[exp]
450 / 3e-154 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10031719
[exp]
449 / 2e-153 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10027203
[exp]
438 / 5e-149 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10031720
[exp]
432 / 1e-146 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10027204
[exp]
432 / 4e-145 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0268 Pec_lyase-like PF01095 Pectinesterase Pectinesterase
CL0268 PF04043 PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence
>Potri.015G127500.1 pacid=42775955 polypeptide=Potri.015G127500.1.p locus=Potri.015G127500 ID=Potri.015G127500.1.v4.1 annot-version=v4.1
ATGGCTACAAAGTTTGGTTTATCTGTTTTGTTCATAAGCTTTTGCTCATTGTTTTCACCAACATTGTCATCTATCACCTCTAATGAGATAGATTCATGGT
GCAACAAAATCCCACACCCTGAACCATGCAAATACTCCATGAAGCAAAACCCAAACCCCTTTATACCTAACCAAGAATTTGAGTCTCGTAAAGTGGCAAT
CGAATTAGCCTTGAAAAGTGCTCTCACTGCTCAAAATCACCACCAGCGGCTATGGCCAACATTACGCAATGAGAAAGAAAAGAATGCATGGAAACATTGC
TTAAACTTCTACAACAAGACCATTGATGAACTCATCCTCGCCCTTGACTCTAACATAAAATCCACCAATTTTGACACTCAAACTTGGCTTAGCGCTGCGT
CAACCTATCTTGAAAGTTGTAAAGACACAATCAATGATCTAGGGGTTTCAGACTCTATGTTACCTCTCATGATGTCTAACAATGTTTCGAAGCTAATAAC
CAACTCTTTGGCTCTACATAACAAAGCCTCATCAGTTTTCCCTCAAACTTATCAAGATGATTTGCCTACCTGGGTTAAAGCATCTGATAGAAAGCTCTTG
CAGGAACCTTCACCATCTCCAGATCTTGTGGTGGCTCAAGATGGATCAGGTGATTACAGTAACATAAAGGCGGCACTTGAAGCCGCAGAAAAGAGTAGTG
GGAATGGGAGGTTTGTTATATATATTAAGAGTGGGGTGTATAAAGAGTATCTTGAAATTGGTAAGAAACTAGAGAATATTATGCTTGTTGGTGATGGAAT
GACAAAAACCATTATCACTGGGAACAAGAGAAGCGGTGGAGGTGTTGACACATTTCACACTGCAACTGTTGGGGTCGATGGTCACGGATTCATTGCTCGG
GACATCACATTCCAAAACACAGCTGGTCCACAAAACCATCAAGCTGTAGCCCTTCGATCAAGTTCCGATTACTCTGTCTTCTACCGTTGTGGTTTTGAAG
GGTATCAAGACACCTTATATGTCCACAGTAAAAGACAGTTCTATAGGGAATGCTCTATCTATGGTACAATAGACTTCATTTTTGGAGACGCAGCTGTTGT
CTTACAAAATTGCATGATATATGTAAGAAGGCCAATTGGTAGCCAAAACAACGTTATAACAGCCCAAGGCAGGTCTTGCCCTTATACTAACACAGGGATT
GTAATCCATAATTCACAAGTATTTGCTGCAGAAGACCTTGGCTCATCAAAAACATACTTAGGAAGGCCATGGAGGAAATACTCGCGTACAGTTTTTCTCT
CAACTTATCTTGATTCTTCGGTGGATCCGGCAGGATGGCTAGAGTGGAATGGTAGTTTTGCCCTAAACACTTTGTATTATGGAGAGTACAAGAACACCGG
ACCTGGAGCTTCGACTAGTGGAAGAGTTAAGTGGCCTGGTTACAAGGTTATAACTAGTGCAGAAGAAGCATCAGAATTCACAGTCGCAAACTTCATAGGT
GGCCGTTCATGGTTGCCAGCTACTGGTGTGCAATTTGCTGCCGGACTTTGA
AA sequence
>Potri.015G127500.1 pacid=42775955 polypeptide=Potri.015G127500.1.p locus=Potri.015G127500 ID=Potri.015G127500.1.v4.1 annot-version=v4.1
MATKFGLSVLFISFCSLFSPTLSSITSNEIDSWCNKIPHPEPCKYSMKQNPNPFIPNQEFESRKVAIELALKSALTAQNHHQRLWPTLRNEKEKNAWKHC
LNFYNKTIDELILALDSNIKSTNFDTQTWLSAASTYLESCKDTINDLGVSDSMLPLMMSNNVSKLITNSLALHNKASSVFPQTYQDDLPTWVKASDRKLL
QEPSPSPDLVVAQDGSGDYSNIKAALEAAEKSSGNGRFVIYIKSGVYKEYLEIGKKLENIMLVGDGMTKTIITGNKRSGGGVDTFHTATVGVDGHGFIAR
DITFQNTAGPQNHQAVALRSSSDYSVFYRCGFEGYQDTLYVHSKRQFYRECSIYGTIDFIFGDAAVVLQNCMIYVRRPIGSQNNVITAQGRSCPYTNTGI
VIHNSQVFAAEDLGSSKTYLGRPWRKYSRTVFLSTYLDSSVDPAGWLEWNGSFALNTLYYGEYKNTGPGASTSGRVKWPGYKVITSAEEASEFTVANFIG
GRSWLPATGVQFAAGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45220 Plant invertase/pectin methyle... Potri.015G127500
[exp]
0 1 PME.4

Potri.015G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.