Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68180 158 / 2e-46 RING/U-box superfamily protein (.1) AT3G56580 121 / 9e-32 RING/U-box superfamily protein (.1.2.3) AT2G40830 116 / 9e-30 RHC1A RING-H2 finger C1A (.1.2.3) AT1G60360 108 / 1e-26 RING/U-box superfamily protein (.1) AT3G10815 97 / 6e-24 RING/U-box superfamily protein (.1) AT5G59550 99 / 4e-23 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G19950 98 / 5e-23 RING/U-box superfamily protein (.1) AT3G46620 97 / 3e-22 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G01980 94 / 4e-21 RING/U-box superfamily protein (.1) AT5G56340 91 / 4e-20 ATCRT1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126700 [exp] 490 / 5e-176 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 119 / 5e-31 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.002G085800 [exp] 120 / 6e-31 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 110 / 6e-28 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.007G074014 [exp] 100 / 2e-24 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 101 / 4e-24 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G036700 [exp] 100 / 5e-24 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 100 / 1e-23 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G090500 [exp] 99 / 2e-23 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022967 [exp] 208 / 4e-65 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10001611 [exp] 203 / 3e-63 AT1G68180 156 / 2e-46 RING/U-box superfamily protein (.1) Lus10003698 [exp] 128 / 2e-34 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10025612 [exp] 120 / 7e-31 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10030755 [exp] 118 / 1e-30 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 116 / 6e-30 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10028063 [exp] 113 / 2e-28 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10001582 [exp] 109 / 2e-28 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10024372 [exp] 102 / 3e-24 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10010179 [exp] 99 / 8e-24 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.015G127600.7 pacid=42776107 polypeptide=Potri.015G127600.7.p locus=Potri.015G127600 ID=Potri.015G127600.7.v4.1 annot-version=v4.1 ATGTCATTGATCAATCGCCCTCGTGTTACAGTCAACGGAATCAGAAGAATGAGAACTTTTCATTACTTCTGGTGTCAAAATTGCCAGCGTACGTTAAGGT TAACCTCCTTAAACCGACTTGAAATCTTTTGTCCGCATTGCTTTAGGGAAATAAATCATGAGCTAGATGTATCAAGGCCCAGGCTTATTGCTGATCTATC TGGCTTAGAGCCGTCTCCAGGTGCACGGTTGTTGGACTCTTTGGCGCAAATGCTCGATCGTCCTACAAGGCGGCAGGATGCTGATTTTGGTAGAAGAATC AGATGGGTACCTGGAAGTGCCAATGGACCTTGGATTACCCTCCAGTTTGTGGATCCTCCAAGCCTGCAAAGACCTGCTATCGCGGCACCACGGCCTGTTG TTCCTCCAAGTAATAGTAGTGATAACAGAAGCCATATTGACAATTTTGGTAACGATGAAGATGATCTGCTCCTTCAAGATACGACACATACTGAACTGCT AGGGCCACCTCCTGCACCAGTTTCGGCAATTGAAGCGTTGCCGGTGGTGAAAATCACTGAACAACATTTGATGAACGACATGCATTGTCCTGTATGTAAG GAGATATTTGAGGTTGGTGGTGACGTGATGGAGCTACCGTGCAAGCATTTGTACCATTCTGATTGCATTGTTCGTTGGCTGAACTTGCATAATACTTGCC CAGTTTGCCGGTATGAGCTATGTGACGAATCTGACAAAGATCTTCCAGGTGAAAATGCTGAGTTTTTTGTCTTTGAAGAGCTGACAAACAGCATAAATTG GCTGAGGAATCAGCTCCATTCTTTACAGCCGATTCGTGCATTTTCTGATTGGACACAGCGATACCTTGATTTCTTAGACAGTAGACTTGCTACTTCGCGT GGAGCTCTTGGTGGCGTTCTTGGTTCATTTTTTAACTCTGAATTCCAAATGCCTCCCAGCTTTAAAGCTGTACATATTAGCCTCATAATTGAATCATTTC TTAGGCAGGTATGTCCATCTACCATTAATTTTTAA
AA sequence Show only first row Show all	>Potri.015G127600.7 pacid=42776107 polypeptide=Potri.015G127600.7.p locus=Potri.015G127600 ID=Potri.015G127600.7.v4.1 annot-version=v4.1 MSLINRPRVTVNGIRRMRTFHYFWCQNCQRTLRLTSLNRLEIFCPHCFREINHELDVSRPRLIADLSGLEPSPGARLLDSLAQMLDRPTRRQDADFGRRI RWVPGSANGPWITLQFVDPPSLQRPAIAAPRPVVPPSNSSDNRSHIDNFGNDEDDLLLQDTTHTELLGPPPAPVSAIEALPVVKITEQHLMNDMHCPVCK EIFEVGGDVMELPCKHLYHSDCIVRWLNLHNTCPVCRYELCDESDKDLPGENAEFFVFEELTNSINWLRNQLHSLQPIRAFSDWTQRYLDFLDSRLATSR GALGGVLGSFFNSEFQMPPSFKAVHISLIIESFLRQVCPSTINF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68180			RING/U-box superfamily protein...		Potri.015G127600 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Potri.001G071200 [exp]	5.09	0.9300
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	5.19	0.9363
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	5.56	0.8842	Pt-AS1.3
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	8.83	0.9275
AT4G39810			Polynucleotidyl transferase, r...		Potri.007G088500 [exp]	10.58	0.9221
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	11.40	0.9154	Pt-SYNC2.1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	15.81	0.9110
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	15.90	0.9107
AT3G10680			HSP20-like chaperones superfam...		Potri.008G014000 [exp]	16.43	0.9139
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	17.43	0.9127	ATGSL11.2

Compare expression of checked genes

Potri.015G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.