Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PME.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 680 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 580 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 564 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 556 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 454 / 1e-156 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G23200 452 / 1e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 446 / 1e-151 ATPME3 pectin methylesterase 3 (.1) AT3G49220 445 / 3e-151 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 436 / 8e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 437 / 3e-148 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126800 [exp] 941 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 721 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 691 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 689 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 611 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 585 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 577 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 513 / 5e-178 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 486 / 1e-167 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 701 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 668 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 667 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 622 / 0 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 547 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 536 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 525 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 521 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 521 / 1e-179 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 501 / 1e-174 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.015G127700.1 pacid=42776539 polypeptide=Potri.015G127700.1.p locus=Potri.015G127700 ID=Potri.015G127700.1.v4.1 annot-version=v4.1 ATGGCCACAAAGCTTTGTTTATCTCTTTTGTTCATGTGCTTATGCTCATTGCTTTCATCATCTATTGCCTCTAATGACCAGATAGATTACTGGTGCAGCA AAACCCCAAACCCTGAACCATGCAAATACTTTATGAAGCAAAACCCAAAACACTTTGTGCCGAAACAAAAGTCTGACTTCCGCAAAATGGCAATCGAATT AGCCGTGCAACGGGCTCTCAATGCTCAAAATCACAACAAATGGCTAGGACCAAAATGCCGCAATGAGAAAGAAAAGGCTGCGTGGGCTGACTGCTTAAAG CTCTATGAGGACACTATTGCAGAACTCAACCACACCATTGACTCCAACACAAAATGCACCCAGTTTGATGCTCAAACTTGGCTTAGCACTGCTTTAACAA ACCTTGAAACCTGCAAAGCCGGGTTCAAGGATCTTGGGGTTTCAGATTTCGTGTTACCTCTCATGTCTAACAATGTTTCAAAGCTAATTCGCAACACCTT GGCTTTGAAGGACAATGCCTCATCAACTTTACCCCAAACTTATAAAGATGGTTTCCCTAGTTGGGTTAAAGCAGGTGATAGAAAGCTCTTGCAAACATCT TCACCATCTCCAAATCTTGTGGTGGCTCAAGATGGTTCAGGGAACCACCGTACCATAAAGGCAGCCCTTGACGCAGCCGCAAAGAGGAGTGGTAGTAGGA GGTTTGTTATTCGTATTAAGAGTGGGGTTTATAGAGAAAATCTTGATATTGGAAAGAAGTTAAAGAACATTATGCTTGTTGGTGATGGCTTGAGAAATAC CATCATCACCGGGAGCCGAAGTGTTGGTGGAGGTTTTACTACTTTCAACTCTGCAACTGTTGCCGTGACTGGGGAAGGATTCATTGCTCGAGGCATCACT TTCCGCAACACAGCTGGTCCACAAAACCACCAAGCTGTGGCCCTCCGATCAGGCTCCGACCTCTCAGTCTTCTACCGTTGTGGCTTCGAAGGTTACCAAG ACACCTTGTACGTCCACTCCCAAAGGCAATTCTACAAGGAATGCTACATCTATGGCACAGTCGATTTCATTTTTGGGAATGCAGCTGTGATCTTACAAAA TTGTATGATATATGCAAGAAGGCCTATGGATAAGCAAAAGAACGTCGTAACAGCTCAAGGCAGGACTGACCCTAATCAAAATACTGGGATTTCAATCCAT AACTCGCGAGTCATGGCTTCATCAGACCTTAGACCAGTGCTAAGCTCATTCAAGACTTACTTAGGACGCCCCTGGAAGGAGTACTCTCGTACAGTTTTTC TTCAAACTTATCTTGATTCTTTGGTGGATCCAGCAGGTTGGTTGGAGTGGGATGGTAACTTCGCTCTAAACACTTTGTATTATGGAGAGTACAGAAATTC TGGTCCTGGAGCCTCCACTAGAGGAAGAGTTAAGTGGCGTGGTTACCGGGTTATAACAAGCTCAACCGAAGCATCAAGATTCACAGTCGCAAACTTCATA GCCGGAAGGTCATGGTTGCCGGCTACTGGTGTCCCATTTTACCCTGGACTTTGA
AA sequence Show only first row Show all	>Potri.015G127700.1 pacid=42776539 polypeptide=Potri.015G127700.1.p locus=Potri.015G127700 ID=Potri.015G127700.1.v4.1 annot-version=v4.1 MATKLCLSLLFMCLCSLLSSSIASNDQIDYWCSKTPNPEPCKYFMKQNPKHFVPKQKSDFRKMAIELAVQRALNAQNHNKWLGPKCRNEKEKAAWADCLK LYEDTIAELNHTIDSNTKCTQFDAQTWLSTALTNLETCKAGFKDLGVSDFVLPLMSNNVSKLIRNTLALKDNASSTLPQTYKDGFPSWVKAGDRKLLQTS SPSPNLVVAQDGSGNHRTIKAALDAAAKRSGSRRFVIRIKSGVYRENLDIGKKLKNIMLVGDGLRNTIITGSRSVGGGFTTFNSATVAVTGEGFIARGIT FRNTAGPQNHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVILQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIH NSRVMASSDLRPVLSSFKTYLGRPWKEYSRTVFLQTYLDSLVDPAGWLEWDGNFALNTLYYGEYRNSGPGASTRGRVKWRGYRVITSSTEASRFTVANFI AGRSWLPATGVPFYPGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45220			Plant invertase/pectin methyle...		Potri.015G127700 [exp]	0	1	Pt-PME.5
AT3G05220			Heavy metal transport/detoxifi...		Potri.005G120200 [exp]	1.00	0.9851
AT5G66420			unknown protein		Potri.005G120100 [exp]	2.82	0.9777
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	4.24	0.9747
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	4.47	0.9745	Pt-PE9.2
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.016G058200 [exp]	4.58	0.9627	HPOX14.2
AT1G07160			Protein phosphatase 2C family ...		Potri.019G071600 [exp]	5.00	0.9695
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	6.48	0.9673
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	7.48	0.9618
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.006G089700 [exp]	8.12	0.9608
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037800 [exp]	9.38	0.9418

Compare expression of checked genes

Potri.015G127700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.