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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G70710	569 / 0	CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
AT1G23210	556 / 0	ATGH9B6	glycosyl hydrolase 9B6 (.1)
AT4G02290	535 / 0	ATGH9B13	glycosyl hydrolase 9B13 (.1)
AT1G02800	520 / 0	ATCEL2	cellulase 2 (.1)
AT4G39010	506 / 1e-176	ATGH9B18	glycosyl hydrolase 9B18 (.1)
AT4G39000	478 / 1e-165	ATGH9B17	glycosyl hydrolase 9B17 (.1)
AT1G71380	461 / 4e-159	ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
AT1G22880	456 / 4e-157	ATCEL5 ,ATGH9B4	ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2)
AT4G11050	433 / 2e-146	ATGH9C3	glycosyl hydrolase 9C3 (.1)
AT4G23560	426 / 8e-146	ATGH9B15	glycosyl hydrolase 9B15 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G127900 [exp]	604 / 0	AT1G23210	568 / 0.0	glycosyl hydrolase 9B6 (.1)
Potri.010G109200 [exp]	552 / 0	AT1G70710	829 / 0.0	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Potri.008G132700 [exp]	551 / 0	AT1G70710	808 / 0.0	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Potri.014G126900 [exp]	529 / 0	AT4G02290	799 / 0.0	glycosyl hydrolase 9B13 (.1)
Potri.002G202400 [exp]	527 / 0	AT4G02290	818 / 0.0	glycosyl hydrolase 9B13 (.1)
Potri.004G162200 [exp]	511 / 1e-178	AT4G39010	703 / 0.0	glycosyl hydrolase 9B18 (.1)
Potri.009G123900 [exp]	503 / 2e-175	AT4G39010	722 / 0.0	glycosyl hydrolase 9B18 (.1)
Potri.001G083200 [exp]	494 / 4e-172	AT1G02800	593 / 0.0	cellulase 2 (.1)
Potri.019G069300 [exp]	479 / 2e-166	AT1G71380	762 / 0.0	ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10027205 [exp]	588 / 0	AT1G70710	584 / 0.0	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Lus10031718 [exp]	571 / 0	AT1G70710	498 / 7e-174	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Lus10031139 [exp]	569 / 0	AT1G70710	489 / 5e-170	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Lus10027201 [exp]	559 / 0	AT1G23210	560 / 0.0	glycosyl hydrolase 9B6 (.1)
Lus10029071 [exp]	548 / 0	AT1G70710	827 / 0.0	CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Lus10008208 [exp]	527 / 0	AT4G02290	812 / 0.0	glycosyl hydrolase 9B13 (.1)
Lus10042071 [exp]	510 / 3e-178	AT4G39010	717 / 0.0	glycosyl hydrolase 9B18 (.1)
Lus10018077 [exp]	510 / 5e-178	AT4G39010	722 / 0.0	glycosyl hydrolase 9B18 (.1)
Lus10038223 [exp]	496 / 6e-173	AT4G02290	706 / 0.0	glycosyl hydrolase 9B13 (.1)
Lus10034199 [exp]	484 / 3e-168	AT1G70710	758 / 0.0	CELLULASE 1, glycosyl hydrolase 9B1 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0059 [poplar] [flax]	6_Hairpin	PF00759 [poplar] [flax]	Glyco_hydro_9	Glycosyl hydrolase family 9

Representative CDS sequence

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>Potri.015G128000.1 pacid=42775087 polypeptide=Potri.015G128000.1.p locus=Potri.015G128000 ID=Potri.015G128000.1.v4.1 annot-version=v4.1

ATGCCTGTTAAATTGATTGGTAGTAGAGGAGAATTGGAATTGAGAGAAAGAATGGGTGGCAAGAGCATGATGAATATGGCTGTACTGATGTTGTTGTTAG

GGGTAACGGTGGTGACAGCAGCCATGTCACATGATTATGGAGATGCGTTGACAAAAAGCATTTTGTTTTTCGAAGGGCAGAGATCAGGGAAGTTGCCTTC

TAATCAAAGGATGAATTGGAGGAAGGATTCTGCCCTTAGAGATGGATCTGATATTGGTATGGATATGGTTGGTGGGTACTATGATGCTGGTGACAACGTA

AAATTCCATTTTCCAATGGCATTCACAACAACGTTGTTGGCGTGGAGTATAGTAGAGTTTGGTGAATCCATGGGCTCAGATTTGGAACATGCGTTAGAGG

CTCTACGATGGGGTACAGACTATTTCCTGAAGGCCACAAGCAAACCTGGCATGGTTGTTGCCCAAGTCGGTGATCCCATCAGTGACCACACATGTTGGGA

GAGACCTGAAGACATGGACACTCTCAGAACTACTTACGTTGTTAATCAAACCCATCCTGGATCAGAAGTTTCAGCCGAGATTGCTGCTGCTCTAGCTGCC

TCTTCTATCGTGTTCAAGGACAAAGACAAACGGTATTCTAGTGTACTTCTCCAGAGGGCATCCCAGGTCTTCGACTTTGCAAACAATTATCAAGGATCTT

ACAATGAAAGTATCGGACGAGGGGCATGCCCATTTTATTGCGATTTCAATGGCTACCATGATGAACTAATCTGGGGAGCAGCATGGTTATCCAAGGCAAC

TCAGGACCCCAAGTACTGGGATTATGTTGTAAAGAACATGGCAACTCTAGGAGGCAGTATTTTTGAGTTCGGATGGGATTCAAAACATAGTGGGATTAAC

ATAATTGTTTCTCCAAAGGTGATGAGCTCCTCTGGTAGTTCCTTCATTACCAATGCTGACAGTTTCGTGTGTTCCTTGTTGCCTGAGTCACCTACCAAAT

CAGTAACATACTCTCCAGGCGGGCTTATGTTCAAACCAGGAGGATGTAACTTGCAACATGCAACGGCTTTATCATTTCTTCTTATTGTTTATTCTCGCTA

TTTACAAGTTGCCAACCGATCAGTTCATTGCGGTTCTGTGGTTGCCACCCCGTCGAGACTCGTCGAGGTCGCCAAAACCCAGGTGGATTACATACTAGGA

AGCAATCCATTAGGGATGTCGTACATGGTTGGATATGGCCCAAAATTCCCACAGAGAATTCATCACCGAGGATCGAGCTTGCCTTCCATGTCTACTTTCC

ATAAACATATTGGATGCCATGATGGCAACAGCTATTTGGCGACCAAAATGCCTAACCGGAACGTCCTTGTAGGGGCTATTGTTGGAGGACCAGACAACAA

CGATCAATTTCTTGATAGTCGTCTCAATGTTAGTCAATCAGAACCAGCTACGTACTTTAATGCACCTTTGGTTGGAGCCTTGGCTTTCTTCAAAGGTGGA

AAATAG

AA sequence

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>Potri.015G128000.1 pacid=42775087 polypeptide=Potri.015G128000.1.p locus=Potri.015G128000 ID=Potri.015G128000.1.v4.1 annot-version=v4.1

MPVKLIGSRGELELRERMGGKSMMNMAVLMLLLGVTVVTAAMSHDYGDALTKSILFFEGQRSGKLPSNQRMNWRKDSALRDGSDIGMDMVGGYYDAGDNV

KFHFPMAFTTTLLAWSIVEFGESMGSDLEHALEALRWGTDYFLKATSKPGMVVAQVGDPISDHTCWERPEDMDTLRTTYVVNQTHPGSEVSAEIAAALAA

SSIVFKDKDKRYSSVLLQRASQVFDFANNYQGSYNESIGRGACPFYCDFNGYHDELIWGAAWLSKATQDPKYWDYVVKNMATLGGSIFEFGWDSKHSGIN

IIVSPKVMSSSGSSFITNADSFVCSLLPESPTKSVTYSPGGLMFKPGGCNLQHATALSFLLIVYSRYLQVANRSVHCGSVVATPSRLVEVAKTQVDYILG

SNPLGMSYMVGYGPKFPQRIHHRGSSLPSMSTFHKHIGCHDGNSYLATKMPNRNVLVGAIVGGPDNNDQFLDSRLNVSQSEPATYFNAPLVGALAFFKGG

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.015G128000 [exp]	0	1

Potri.015G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.015G128000 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.015G128000 coexpression network