Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 486 / 2e-172 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 454 / 4e-160 zinc ion binding (.1.2) AT5G09630 363 / 7e-124 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 112 / 2e-27 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT1G06060 45 / 2e-05 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127300 [exp] 712 / 0 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 491 / 2e-174 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 484 / 1e-171 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 116 / 5e-29 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019837 [exp] 506 / 0 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 501 / 2e-178 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 499 / 1e-177 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 495 / 8e-177 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10020487 [exp] 423 / 1e-147 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 162 / 4e-46 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 122 / 9e-30 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 120 / 3e-29 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain CL0229 [poplar] [flax] RING PF13445 [poplar] [flax] zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence Show only first row Show all	>Potri.015G128600.1 pacid=42775780 polypeptide=Potri.015G128600.1.p locus=Potri.015G128600 ID=Potri.015G128600.1.v4.1 annot-version=v4.1 ATGGATCTGAATCCCATCAAGGATGCATTTGATCGTGTTGCCAAAAAGCAAAAGATGTCTGGTTCTAAAACACAAGAAGTCGTTGCCCAGATGATACTAG AGATTGAGAATTCATTAGAGATAATTAAGGCAGAACATTTTGGTTCTGAAGTGGACTGTAAATCTGTCTTTGGTGAACTTAAGAAAAAGTTGCTAGAAAT TGCTCCACTCAGTCAGCTGGAAGGCACACAGAAGGAACTAAATATAGCACTGAGCAAGTACCCAAAGCAGCTTGAGAAATCTTTCAACCCAGACATAGCC AAAGCTTATAGAAACATCGATTTTGATGCTCACACTGTTAACCAGATAATTGCCGGCCATTTCTACCGGCAAGGACTGTTTGATGTCGGTGACTGCTTTA TAAATGAGGCCAATGTACCAGAATCTACTGCTGCTATGAAATCTCTTTTCTCAGAAATGTATCTGATACTCGAAGCTATGAAGAACAAAAATCTAGAACC TGCGCTAAACTGGGCTACTGCCAATTCCAATAAGCTCAAAGAAAATGGGTCAGACCTGCTGCTGAAACTTCATTGCCTGCAGTTTGTGGAAATACTGCAA GGTGGAAGTAGAAGCAAAGCGCTCTCATATGTTAGAACTCACATTTCTCCTTTTGGTGCCAACCATTTTTCAGAAATCCAGAAGCTTATGGCCTGTCTCC TGTGGTCTGGAAGGCTCCATCACTCTCCATATTCTGATTTACTATCACCCACTAATTGGAATGTGGTGGCTGAGGAACTTACGAGGCAGTTTTGTAATCT TTTGGGGCAGTCTTTTGATAGCCCATTGAGTGTGACAATAGCAGCAGGGTTCCAGGGTCTGCCACCTCTTTTGAAGTTTATGAATGTGATGGCAGGGAAG AAACATGAGTGGCAGTCAATGAAACAGTTACCAGTGCCAGTGGAGTTGGATAGGGAATTTCAGTTCCATTCCATCTTTGTATGTCCTGTGTTAAAGGAGC AATCAACTGACGAGAACCCCCCTATGTTGATGCAGTGTGGCCACGTGCTATGCAAGCAGTCTATCAATAAGATGTCAAAGAACGGGTCCAAAACTTTTAA ATGCCCTTACTGTCCGTCTGACATCGATTCAACACAGTGTAGGCAGTTACATTTCTGA
AA sequence Show only first row Show all	>Potri.015G128600.1 pacid=42775780 polypeptide=Potri.015G128600.1.p locus=Potri.015G128600 ID=Potri.015G128600.1.v4.1 annot-version=v4.1 MDLNPIKDAFDRVAKKQKMSGSKTQEVVAQMILEIENSLEIIKAEHFGSEVDCKSVFGELKKKLLEIAPLSQLEGTQKELNIALSKYPKQLEKSFNPDIA KAYRNIDFDAHTVNQIIAGHFYRQGLFDVGDCFINEANVPESTAAMKSLFSEMYLILEAMKNKNLEPALNWATANSNKLKENGSDLLLKLHCLQFVEILQ GGSRSKALSYVRTHISPFGANHFSEIQKLMACLLWSGRLHHSPYSDLLSPTNWNVVAEELTRQFCNLLGQSFDSPLSVTIAAGFQGLPPLLKFMNVMAGK KHEWQSMKQLPVPVELDREFQFHSIFVCPVLKEQSTDENPPMLMQCGHVLCKQSINKMSKNGSKTFKCPYCPSDIDSTQCRQLHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	0	1
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	2.00	0.7847
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	3.00	0.7474
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.006G231100 [exp]	3.31	0.7150
					Potri.010G148450 [exp]	5.29	0.7431
AT4G38040			Exostosin family protein (.1)		Potri.008G060500 [exp]	17.29	0.6923
AT3G60520			unknown protein		Potri.002G142600 [exp]	20.78	0.7008
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.019G130700 [exp]	21.30	0.7484	C4H1,Pt-CYP73.3
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	29.17	0.6763	GMD1.1
AT1G80650		RTL1	RNAse THREE-like protein 1 (.1...		Potri.003G179700 [exp]	29.24	0.6713
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	29.39	0.6922

Compare expression of checked genes

Potri.015G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.