Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25270 664 / 0 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 305 / 9e-96 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 290 / 3e-88 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 276 / 1e-83 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G04780 268 / 5e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 268 / 6e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 268 / 1e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 268 / 2e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 266 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 264 / 3e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128900 [exp] 293 / 3e-91 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 293 / 3e-91 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 287 / 2e-89 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G124400 [exp] 287 / 5e-89 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 289 / 6e-88 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G037600 [exp] 283 / 7e-88 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 291 / 2e-87 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 286 / 2e-87 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 282 / 2e-87 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031714 [exp] 695 / 0 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 289 / 1e-88 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 281 / 3e-87 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031989 [exp] 279 / 2e-85 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 280 / 5e-85 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 274 / 1e-84 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 279 / 4e-84 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008136 [exp] 273 / 7e-84 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 277 / 8e-84 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 273 / 8e-83 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G128800.1 pacid=42775130 polypeptide=Potri.015G128800.1.p locus=Potri.015G128800 ID=Potri.015G128800.1.v4.1 annot-version=v4.1 ATGGTAACCATTCTCCAGCCACCAAGCTTCCACACACCTTCAAGAACTCTCCACCACTACCCTTCCATCACAAGCAAAACAAGCAGGAAAAAAAGAGAGC TAAAAGAGAAACACAAACAAACACAGTTCCAAAAAAACCTTAACAAAAGAACCCTTTCTTTCCCAAAATCTTCCCCAACTCCTCTCCTTATTAACCACAG GCCCCCTCCCCAAACCCAACTAGAAGCCTTAGAAAACGTTATCAAAGACCTCCAGTCCTCCATGGAAAAGGGCATTAGAATTGATACTCAAATTTTCTCT TCGCTTTTAGAAACATGTTACCGTTTAAATGCTATAGAACTTGGTGTTAAGATTCATAGGCTAATACCCATCAATCTTTTACGTAGAAATGCTGGCATTT CGTCGAAATTGGTGAGGTTGTACTCGTCATGTGGGGATGTTGAAGTAGCTCACCAGGTGTTTGATGAAATGTTTAAGAGAGGGGAGTCGGCGTTTCCATG GAACTCGCTTATTGCAGGGTATACTGAATCGGGTCTGTATGAGGACGCTATGGCGCTTTACTTTCAAATGGAAGAAGAGGGTGTTGAACCGGACCAGTTT ACGTTCCCTCGGGTTTTGAAAGCTTGCGGGGGAATTGGGTTGATTCGGATAGGCGAGGCGGTGCATAGGGATTTAGTTAGGTTGGGTTTTGCTAATGATG GATTTGTGTTAAATGCGCTTGTTGATATGTATGCGAAATGTGGTGACATTGTTAAGGCTAGAAGGATATTTGATAAGATAGATTGTAAGGACTCTATATC ATGGAATTCTATGCTTACGGGTTATATTCGTCATGGGTTAATAGCCGAGGCATTACACACATTTCATAGTATGGTTCATGATGGGATGGAGCTTGATTCG GTGGCTGTTTCAACAATCCTTGCCAATGTATCGTCTTTTGAGGTTGCAGTTCAAATTCATGGATGGATTGTCAGGAGAGGAATGGAGTGGGATTTTTCTA TTGCTAATTCTTTGATTGCTGTCTACTCAAATGGCAGGAAGTTGGATCGAGCACGTTGGTTGTTTGATCACATGCCAAAGAAGGATATTGTATCATGGAA TTCTATAATTTCTGCTCATTGTAAAGATCTCAAGGCATTGACTTACTTTGAGTTGATGGAGAGGGATGGTGCTTTGCCCGATAAAATCACATTTGTGTCA TTACTATCAGCTTGCGCTCATTTGGGTTTAGTGAAGGACGGGGAGAGGTTATTTTCACTGATGAAAGCGAAATACCAGATAAATCCTATCATGGAGCACT ATGCTTGTATGGTGAATCTTTATGGAAGGGCAGGATTAATCAACGAGGCATACGCCATCATTAGGGATCAAATGGAGTTCGAGGCTGGTCCAACTGTCTG GGGAGCGTTGTTGTATTCTTGTTATCTCCACCGTAATGTAGATACTGGAGAGATTGCAGCTCAATATCTTTTTGACTTGGAGCCAGATAATGAACACAAT TTTGAACTCTTGATGAAGATCTACGACAATGCAGGTAGATTGGAGGATGCAGAAAGAGTAAGAAAAATGATGGTTGACAGGGGATTGTAA
AA sequence Show only first row Show all	>Potri.015G128800.1 pacid=42775130 polypeptide=Potri.015G128800.1.p locus=Potri.015G128800 ID=Potri.015G128800.1.v4.1 annot-version=v4.1 MVTILQPPSFHTPSRTLHHYPSITSKTSRKKRELKEKHKQTQFQKNLNKRTLSFPKSSPTPLLINHRPPPQTQLEALENVIKDLQSSMEKGIRIDTQIFS SLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDVEVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQF TFPRVLKACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVKARRIFDKIDCKDSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDS VAVSTILANVSSFEVAVQIHGWIVRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDIVSWNSIISAHCKDLKALTYFELMERDGALPDKITFVS LLSACAHLGLVKDGERLFSLMKAKYQINPIMEHYACMVNLYGRAGLINEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFDLEPDNEHN FELLMKIYDNAGRLEDAERVRKMMVDRGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	0	1
AT3G22690			unknown protein		Potri.013G044700 [exp]	1.73	0.9844
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	3.46	0.9712
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	4.47	0.9723
AT3G57990			unknown protein		Potri.001G145400 [exp]	4.69	0.9648
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	6.00	0.9722
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	6.48	0.9590
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.015G129600 [exp]	6.48	0.9688
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	6.78	0.9507
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Potri.010G110100 [exp]	7.07	0.9691
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	8.48	0.9540

Compare expression of checked genes

Potri.015G128800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.