Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25280 300 / 1e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 237 / 2e-79 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 225 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G60961 161 / 2e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47840 102 / 7e-26 AMK2 adenosine monophosphate kinase (.1) AT5G35170 96 / 2e-22 adenylate kinase family protein (.1.2) AT5G63400 87 / 2e-20 ADK1 adenylate kinase 1 (.1.2) AT5G50370 79 / 1e-17 Adenylate kinase family protein (.1) AT2G37250 79 / 2e-17 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 74 / 3e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043300 [exp] 245 / 2e-82 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 243 / 1e-81 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G104700 [exp] 243 / 2e-81 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.019G078200 [exp] 96 / 1e-23 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.013G103400 [exp] 95 / 6e-23 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 92 / 2e-21 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.010G215300 [exp] 81 / 7e-18 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.008G046100 [exp] 79 / 3e-17 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.015G092800 [exp] 78 / 3e-17 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031714 [exp] 313 / 3e-102 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031135 [exp] 278 / 4e-95 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031611 [exp] 236 / 9e-79 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033733 [exp] 237 / 4e-78 AT5G26667 336 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10019509 [exp] 150 / 6e-46 AT5G26667 217 / 5e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10003504 [exp] 99 / 6e-25 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10009228 [exp] 99 / 8e-25 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10037995 [exp] 97 / 1e-24 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009478 [exp] 94 / 1e-23 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 91 / 9e-21 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00406 [poplar] [flax] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Potri.015G129000.1 pacid=42775942 polypeptide=Potri.015G129000.1.p locus=Potri.015G129000 ID=Potri.015G129000.1.v4.1 annot-version=v4.1 ATGTGGCGGCGCGTGACTTCACTTTCTCCAGTGATGTCCACCTCAAAACCAACCTCGCTTGATCAGGCAGCTTCTGGCTTCAAGATATGGAGATCGTCAT TTAGTACAGAGACACCCACTTTGGTAAAAGATGGAACTACTTCGTTCAAAGAGAGAAACCCATTTATTACTTTTGTCCTAGGTGGTCCTGGTAGTGGAAA AGGCACACAATGCCAAAAGATTGTTGAAACATTTGGATTCAAACATCTGAGTGCAGGAGAGTTGTTAAGGAGAGAAATAGAGTCTAACAGTGAACATTGG TCCCAGATGCTTAACACAATTAAAGAAGGCAGGATTGTTCCTTCAGAAGTGACTGTCAGACTGATCCAGCAAGAGATGGAATCAAGTGACAGCAATAAAT TTCTCATTGATGGTTTCCCACGAACTGAGGAGAATCGAATAGCATTTGAACAATTAATTGGGCTTGAACCGAATGTTGTGCTTTTCTTTGACTGTCCTGA AGAAGAGATGGTAAAACGAGTGCTAAACCGCAATCAGGGCCGAGTTGATGACAACATAGATACAGTCAAGAAACGTCTTAAAGTGTTTGAAATCCTAAAT CTTCCTGTTATTGACTACTATTCCAAGAGAGGGAAACTTTGTAAGATCAATGCAGTGGGAACAGAAGATGAGATTTTTGAAAAAGTCCGCCCTATTTTTT CTGCTTGTGCTGGAAAATGA
AA sequence Show only first row Show all	>Potri.015G129000.1 pacid=42775942 polypeptide=Potri.015G129000.1.p locus=Potri.015G129000 ID=Potri.015G129000.1.v4.1 annot-version=v4.1 MWRRVTSLSPVMSTSKPTSLDQAASGFKIWRSSFSTETPTLVKDGTTSFKERNPFITFVLGGPGSGKGTQCQKIVETFGFKHLSAGELLRREIESNSEHW SQMLNTIKEGRIVPSEVTVRLIQQEMESSDSNKFLIDGFPRTEENRIAFEQLIGLEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTVKKRLKVFEILN LPVIDYYSKRGKLCKINAVGTEDEIFEKVRPIFSACAGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	0	1
AT5G63520			unknown protein		Potri.015G098700 [exp]	2.44	0.8144
AT1G10970		ATZIP4, ZIP4	zinc transporter 4 precursor (...		Potri.018G053300 [exp]	7.74	0.7735
AT5G19210			P-loop containing nucleoside t...		Potri.010G092200 [exp]	8.48	0.8015
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	8.94	0.7996	SEU.1
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	9.53	0.8179
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	10.90	0.7805	Pt-HDA9.2,HDA904
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	14.86	0.7468
AT1G74320			Protein kinase superfamily pro...		Potri.001G032000 [exp]	15.49	0.7353
AT5G15940			NAD(P)-binding Rossmann-fold s...		Potri.001G453500 [exp]	16.30	0.7362
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	23.32	0.7488	MHK.1

Compare expression of checked genes

Potri.015G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.