Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IRE.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62310 1358 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 1020 / 0 Protein kinase superfamily protein (.1) AT1G48490 976 / 0 Protein kinase superfamily protein (.1.2.3) AT1G45160 647 / 0 Protein kinase superfamily protein (.1.2) AT1G30640 270 / 1e-78 Protein kinase family protein (.1) AT4G33080 263 / 7e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT4G14350 259 / 4e-75 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 256 / 1e-73 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 250 / 3e-72 Protein kinase family protein (.1.2) AT2G20470 251 / 5e-72 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127800 [exp] 1926 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G044700 [exp] 1076 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 1076 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.002G263000 [exp] 606 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 260 / 3e-75 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 258 / 3e-74 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 255 / 3e-73 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.005G226700 [exp] 254 / 5e-73 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G224800 [exp] 253 / 5e-73 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038912 [exp] 1479 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10027196 [exp] 1475 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 990 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10031906 [exp] 803 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10005470 [exp] 580 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033911 [exp] 257 / 7e-74 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 256 / 2e-73 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10021176 [exp] 254 / 2e-73 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 254 / 2e-73 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10042650 [exp] 248 / 3e-71 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G129200.2 pacid=42775803 polypeptide=Potri.015G129200.2.p locus=Potri.015G129200 ID=Potri.015G129200.2.v4.1 annot-version=v4.1 ATGTCGACAACCAATCACCATCATGAAGTTCCTTCATCGTCGTCGTCGTTAAAAACGATGCCATTTCCTTCACCATCGACTCTCAATTCCTCCTCCTCCT CATCTCCTTCCTCTTTCAAACTCCGAAAAATCCCTCCCATTCCAATCCGCCGAATCCAGAAACCCGAGGCTCCACTGAACGACACCGAATCAATCAACAA TGACGACGGCAACGACACAGATTGCGGTGATAAAAATGACGACAAGGAGAAATTGGAGAAGAGAAATTATAAAGCGGACGAGAATTCGCCAATAATTATG GCGTCGGCGCTCGGGTTGAATCATATAAGGACACGTTCCCTTCCGATTCCTTCTCCGCTTAGGTTTTCGTCGTCAGCTGCTACGCCGTCGTATTTAGGGA ATGCTCAGGTTAATAATAATAATGATGATGAGGTTAAAACTGGAGTCGACACGAGGCTTAATGGATCGTCCTTTGAACAAGGGAAAAAGATTTCGTGGGG TGAAGCGAAACCATTTAGAGCTCACTCGCAACTCAATCCAGCAATGGAGAGTAATCATGCAGCATTTTTTGCAAAGGAAATCCAGTCTCCGCGTTTTCAA GCTATATTGCGTGTTACAAGCGGTAGGATGAAGAAGAGTCCGGATATTAAGAGCTTCTCTCATGAGCTTAATTCCAAAGGGGTTAGGGCTTTTCCAGTTT GGAAGTCCCGCGCATTTGGTCATATGGAGGAAGTTATGGTGGCAATCAGGATGAAATTCATCAGGTTAAAAGAGGAAGTTGATTCTGATTTAGGTATATT TGCTGGGGATTTGGTGGGTATACTTGAAAAGACCTCAGACACTCACCCCAAATGGAGAGAGAGTTTGGAGGACTTGTTGGTTGTAGCTCGACAATGTGCA AAGATGTCTTCTAACGAATTCTGGGTGAAAGGTGAGGGTATCGTCCAGAACCTAGACGATAAGCGTCAAGAGCTTCCAATGGGGATTGTCAAACAAGCAC ACACCCGGCTTTTATTTATCCTCACTCGATGCACTAGGCTTGTGCAGTTCCAAAAAGAGAGTGGTTGTGATGAAGACAAAATTCTGGGCATTCATCAATG TAGTGATCTTGGAGTTTATCGTGAACAGATTATTGAAATTGCACAACAGGACTTTAGCGGTCCATTGGTGGGTTGGAAGACAGCGGGTGAGAAGCAGAGA AAGAAATCCTGTGGTATTGAACAAGACACTCAAGTTACAAAGCAGGATCAAGTAGATCAGTCTTTGGAGGTTGGCACTGCAAAAAGTGTTGATTCAACTG CAAGCAGCTTTAAGATGTCATCTTGGAGGAAACTTCCATCCGCTGCTGAGAAAAATCGGAAGGACACTGATGTTGTTCAAACACCTTTCAAGGATAAATC AGAACCACTACTTGATAGAGATGATTATTCTGAAAATCTTGAAACTCCAGACCATCCTCCATCCCCAGGAACAAAAAGAGTTTCTTGGGGACTCTGGGTG GATCAACACAATGTTGCATATGAAAATTCTATGATATGCCGGATCTGTGAGGTTGAAATACCGATTGTACATGTAGAGGAACACTCTCTAATTTGTACTA TTGCCGACAGATGTGACTTGAAAGGCTTTACTGTAAATGAAAGACTTGAAAGAGTTGCAGAAACTCTTGAAAAGATACTGCGCTCATGGTCACAAAAAAC CACACCAAAAAGTACACCAAAAAGATGTGATACTCCAAGAGTAAGTCCTGAGGTTGAAAGAGTGCCCACATCAGGTATTCATGAGGTGTCAGATGGGTTA TCACCAAAACGAAACAACTTTTCTTCTTGCTGCTCTGAAGAGATGCTTGATGTTGTGCCTGATTCTTTTGTGATGGAAGATATCAATGTTTTTCCAGAAA TTTCATGTGAAGCACGTTCCACTCAAACACCTGATGCAGACAAAATAACCTCATCAAGAGAAAGCTTGACACCACGATCACCATTATTAACTCCACGGAC TAGCCAAATTGGTTTACTATTGAGTGGACAGAGGACAATAACAGAACTTGAGGGTTGTCATCAGATAAGCAAGCTACTGGATATTGCTCGCTCTGTTGCA AGTCTAAATGACAATGACTATAGTGCACTAGAGAGCATGCTGGACTGTCTGGAAGACCTAAAATATTCTGTTCAGGACAGGAAGGTGGATGCCCTCATTG TAGAGACTTTTGGAAGACGCATAGAGAAATTACTTCTGGAGAAATATGTGCATCTCTGTACCCAAATAGATGATGAGAAATCGGACCCATCAAATCAGAT GGCTGATGAAGACAGTTCTGAGGAAAATGATGCAGTTCGCAGTTTGCGTACAAGTCCTGTTAACATGTCTTCCAAAGACCGAACCTCTATAGATGATTTT GAAATAATAAAACCAATCAGTAGAGGGGCCTTTGGAAGGGTTTTCCTTGCCAGAAAAAGAGCTACTGGAGATTTGTTTGCTATAAAGGTCCTGAGGAAGG CTGATATGATTTGTAAAAATGCAGTTGAAAGTATTTTGGAAGAGCGTAAAATCCTCATATCAGTGTGCAATCCTTTTGTGGTTCGATTTTTCTACTCCTT CACATGCAGTGAAAATCTTTATCTGGTCATGGAGTATCTAAATGGTGGAGATCTGTACTCTTTATTGAGAAACTTGGGCTGCTTGGATGAAGACATGGCC CGTATGTATATTGCAGAAGTTGTTCTTGCTTTGGAGTACTTGCATTCTTCAAATGTCATTCATAGAGACTTGAAGCCGGACAACTTGTTGATTAATCAAG ATGGTCACATCAAGTTGACAGATTTTGGGCTATCAAAAGTTGGTCTTATCAACAGTACAGATGACTTATCTGTTCCGTTAGTCAGTAGTTCTGGTTTTCT TGATGATGATGAACTAAAGGGTCAATCGTCATCCAAGAGAGAAGAGCGTCAAAAGCATTCAGTTGCTGGCACTCCTGATTATTTGGCACCTGAGATACTT CTCGGCATGGGCCATGGTGCAACTGCTGATTGGTGGTCTGTGGGTATTATTCTTTTCGAGCTGCTTGTTGGTATACCTCCATTCAATGCAGATACTCCAC AGAAAATATTTGACAACGTAATGAATAGAGATATACCCTGGCCCAGGGTTCCTGAAGAGATGAGCTTTGATGCCTGTGATTTGATTGACAAATTGTTGAC AGAAAATCCACTTCAAAGGTTAGGAGCAATAGGAGCTAGAGAGGTTAAGAACCATTCTTTCTTTAGAGACATAAATTGGGAAACGCTTGCAAGGCAAAAG GCTATGTTCATTCCATCGGGAGAAGCACATGACACGAGTTATTTTTTGAGCCGTTATATATGGAATCCAGAAGGTGAAAATGTTCATGGAGGCAGTGACT TTGAGGACTTGACAGACACATGCAGCAGTGGTTCATTCAGCAATACACATGATGACGATGTGGATGGATGTGGTACCATGGCAGGGTTTGGTGCTCCAAC TCTTGATGTGAAGTATTCTTTTAGTAATTTCTCATTTAAGAATTTGTCTCAGCTGGCATCCATCAATCATGATCTAGTTGTTAAGAGCACCAAGGAAGCA GCAGATGCTTCCAAACCACCAGTTCAATGA
AA sequence Show only first row Show all	>Potri.015G129200.2 pacid=42775803 polypeptide=Potri.015G129200.2.p locus=Potri.015G129200 ID=Potri.015G129200.2.v4.1 annot-version=v4.1 MSTTNHHHEVPSSSSSLKTMPFPSPSTLNSSSSSSPSSFKLRKIPPIPIRRIQKPEAPLNDTESINNDDGNDTDCGDKNDDKEKLEKRNYKADENSPIIM ASALGLNHIRTRSLPIPSPLRFSSSAATPSYLGNAQVNNNNDDEVKTGVDTRLNGSSFEQGKKISWGEAKPFRAHSQLNPAMESNHAAFFAKEIQSPRFQ AILRVTSGRMKKSPDIKSFSHELNSKGVRAFPVWKSRAFGHMEEVMVAIRMKFIRLKEEVDSDLGIFAGDLVGILEKTSDTHPKWRESLEDLLVVARQCA KMSSNEFWVKGEGIVQNLDDKRQELPMGIVKQAHTRLLFILTRCTRLVQFQKESGCDEDKILGIHQCSDLGVYREQIIEIAQQDFSGPLVGWKTAGEKQR KKSCGIEQDTQVTKQDQVDQSLEVGTAKSVDSTASSFKMSSWRKLPSAAEKNRKDTDVVQTPFKDKSEPLLDRDDYSENLETPDHPPSPGTKRVSWGLWV DQHNVAYENSMICRICEVEIPIVHVEEHSLICTIADRCDLKGFTVNERLERVAETLEKILRSWSQKTTPKSTPKRCDTPRVSPEVERVPTSGIHEVSDGL SPKRNNFSSCCSEEMLDVVPDSFVMEDINVFPEISCEARSTQTPDADKITSSRESLTPRSPLLTPRTSQIGLLLSGQRTITELEGCHQISKLLDIARSVA SLNDNDYSALESMLDCLEDLKYSVQDRKVDALIVETFGRRIEKLLLEKYVHLCTQIDDEKSDPSNQMADEDSSEENDAVRSLRTSPVNMSSKDRTSIDDF EIIKPISRGAFGRVFLARKRATGDLFAIKVLRKADMICKNAVESILEERKILISVCNPFVVRFFYSFTCSENLYLVMEYLNGGDLYSLLRNLGCLDEDMA RMYIAEVVLALEYLHSSNVIHRDLKPDNLLINQDGHIKLTDFGLSKVGLINSTDDLSVPLVSSSGFLDDDELKGQSSSKREERQKHSVAGTPDYLAPEIL LGMGHGATADWWSVGIILFELLVGIPPFNADTPQKIFDNVMNRDIPWPRVPEEMSFDACDLIDKLLTENPLQRLGAIGAREVKNHSFFRDINWETLARQK AMFIPSGEAHDTSYFLSRYIWNPEGENVHGGSDFEDLTDTCSSGSFSNTHDDDVDGCGTMAGFGAPTLDVKYSFSNFSFKNLSQLASINHDLVVKSTKEA ADASKPPVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.015G129200 [exp]	0	1	Pt-IRE.2
AT4G16650			O-fucosyltransferase family pr...		Potri.001G157400 [exp]	5.47	0.8061
AT1G28240			Protein of unknown function (D...		Potri.011G053000 [exp]	7.34	0.8485
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.001G185050 [exp]	10.95	0.7585
AT1G51540			Galactose oxidase/kelch repeat...		Potri.008G006200 [exp]	12.00	0.8124
AT3G03810		EDA30	embryo sac development arrest ...		Potri.019G036600 [exp]	18.73	0.7539
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	21.02	0.7628
AT3G20720			unknown protein		Potri.011G132800 [exp]	21.84	0.7415
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.004G037000 [exp]	22.09	0.8047
AT1G13630			Tetratricopeptide repeat (TPR)...		Potri.010G137200 [exp]	32.31	0.7591
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	33.88	0.7881

Compare expression of checked genes

Potri.015G129200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.