Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51540 1015 / 0 Zincin-like metalloproteases family protein (.1) AT1G67690 179 / 2e-47 Zincin-like metalloproteases family protein (.1) AT5G65620 153 / 1e-38 Zincin-like metalloproteases family protein (.1) AT5G10540 148 / 4e-37 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054466 [exp] 188 / 1e-50 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 144 / 1e-35 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 144 / 1e-35 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031715 [exp] 1067 / 0 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 964 / 0 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 181 / 6e-48 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 174 / 2e-45 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 145 / 7e-36 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 100 / 2e-21 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01432 [poplar] [flax] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Potri.015G129300.1 pacid=42776663 polypeptide=Potri.015G129300.1.p locus=Potri.015G129300 ID=Potri.015G129300.1.v4.1 annot-version=v4.1 ATGTCCGCCCTAATCCGCCGGTATGCGGCGGTGCTCTGTCACAAACGCATGCTCAAACCAAACTATCCGACTCTTGTCTTGACCTGCCACGTCAGCACCT GGGTCGCCCCTCAACTAAACGGAGCTGCCGCCACCACGGGACTCTACGGTTTTGATCATTTAAAAACCCCTAAAGGGTTTCAACGTTTTGTTGATGATGC CATTGAAAGGTCAGGGGAGCTGGTTAATTATATTTCCAGTATGCCTTCCTCGGCTGAAGTTTTACGAGCTATGGATGAGATTTCTAACACGGTATGTTGT GTTGTGGATTCTGCGGAACTTTGTAGAAATACTCATCCAGACAGGGAATTTGTTGAGGCAGCTGGTAAGGCATCGATGAGGATTAATGAATATCTACATT ACCTCAATACGAATCATACTTTATATGCTGCGGTGAAAAGAGCAGAGAAAGATGGACATTTGCTCACAAAAGAGGCTCATAGGGCTGCCAATCAATTACG TATTGATTTTGAGAAGGGCGGGATTCATCTCCCTCCTGAGAAGTTAGCTAGAGTGAATCAGCTCCATTTAAGCATCCTTCAGCTAAGTAGAGAGTTTGGT GAAAATATTACTATTGATCCAGGTTATGTGGATATATTTCCAGCATCTCGCATCCCAAAACACATACACCATCTCCTAAAACCCGTTCACCGTTTTACTT CTGGAAGTTCCTCGGGATCATTAGGGTCATGGAATAACATGAAAGAAAAAGGACTGCGAATAACAACAGATCATCGTACGCTGGTTTCTGTGATGCATTG GGTCTCAGATGAAGAGGTTAGGAAGATGGCATATATCCAAGGAAACTCTGTACCACATGCAAACCTTGAAGTACTTGATAAGCTTGCTGCAGCTCGTCAT GAACTGGCCCAGATGATGGGATACAGATCTTATGCTGAATTTGTTGTGAAACCAAACTTGGCTTCATCACCTGAGGTTGTGATTTCATTTCTGCATGAAA TGAGCAAGATGGTTAGGCCAAGGGCTGATGAGGAGTTTGAGGCAATTAGGAATTTTAAGAGAGAGAAATGTGGTCAAAGATGTATTGATTTGGAGCCCTG GGATGAGACGTACTATACAGCAATGATGAAATCCTCTGCTCATAATTTGGATTCTTCTATTGTAGCCTCGTATTTTCCTCTGCCACAATGTATTGAAGGT TTGAAAGTGCTGGTCAACTCATTATTTGGTGCAATGCTTCGCAACATCCCCATGGCACCAGGTGAATCGTGGCACCCTGATGTGCTTAAAATGTCTCTTC ATCATCCTGAAGAGGGTGACTTGGGATATCTATACCTTGATTTGTACTCCAGGAAAGGAAAATATCCAGGTTGTGCTAACTTTGCTGTTAAAGGAGGCTG CCGCATTTCTGAGACAGAATACCAACTTCCTGTTGTGGCCCTTCTTTGCAATTTTTCTGGTTCACCTGGCTCATCAACCGTGAGACTTAATCATGGTGAT GTAGAAACTCTATTCCATGAGTTTGGACATGCTCTCCATTCATTGTTCTCGAGAACGGATTACCAACATTTCTCAGGCACCAGGGTGGCTCTTGACTTTG CTGAAATGCCTTCAAACCTCTTTGAGTACTATGCCTGGGACTACAGAGTATTAAGGACATTTGCAAAGCACTACTCAACTGGTGAAATAATACCTGAGAA GTTGGTGAAGTCCATGCAAGGTGCCAGAGATATGTTTGCTGCAACTGAACTGCAACGCCAGGTTTTTTACGCATTGGCTGACCAAACACTCTTTGGAGAA CAACCAGCTTCACCCAATGATATGAGCTCTATTCTTGCTGAATTCAAAATGCAGCACACCAGCTGGAAACATGTGGAGGGTACAAATTGGCAGATCAGAT TCAGCCATCTTGTAAATTATGGTGCAGGTTATTATAGCTACTTGTATGCAAAATGTTTTGCTGCAACCATATGGAAAAAGTTATGCCAAGAGGATCCACT TTCATTAACTGCAGGAACTGCTCTTCGAACAAAAGTGTTGCAGCATGGTGGATCCAAAGAACCAGCTGAATTATTAAACGATCTGGTAGGGGAAGGCATT TTAAAGCATTGTGATGGAGGGATCGTTCCTGACATTACATGTTTCTTGGAAGAATCAAGGTTGGTAGTTGGTAGTTGGTAG
AA sequence Show only first row Show all	>Potri.015G129300.1 pacid=42776663 polypeptide=Potri.015G129300.1.p locus=Potri.015G129300 ID=Potri.015G129300.1.v4.1 annot-version=v4.1 MSALIRRYAAVLCHKRMLKPNYPTLVLTCHVSTWVAPQLNGAAATTGLYGFDHLKTPKGFQRFVDDAIERSGELVNYISSMPSSAEVLRAMDEISNTVCC VVDSAELCRNTHPDREFVEAAGKASMRINEYLHYLNTNHTLYAAVKRAEKDGHLLTKEAHRAANQLRIDFEKGGIHLPPEKLARVNQLHLSILQLSREFG ENITIDPGYVDIFPASRIPKHIHHLLKPVHRFTSGSSSGSLGSWNNMKEKGLRITTDHRTLVSVMHWVSDEEVRKMAYIQGNSVPHANLEVLDKLAAARH ELAQMMGYRSYAEFVVKPNLASSPEVVISFLHEMSKMVRPRADEEFEAIRNFKREKCGQRCIDLEPWDETYYTAMMKSSAHNLDSSIVASYFPLPQCIEG LKVLVNSLFGAMLRNIPMAPGESWHPDVLKMSLHHPEEGDLGYLYLDLYSRKGKYPGCANFAVKGGCRISETEYQLPVVALLCNFSGSPGSSTVRLNHGD VETLFHEFGHALHSLFSRTDYQHFSGTRVALDFAEMPSNLFEYYAWDYRVLRTFAKHYSTGEIIPEKLVKSMQGARDMFAATELQRQVFYALADQTLFGE QPASPNDMSSILAEFKMQHTSWKHVEGTNWQIRFSHLVNYGAGYYSYLYAKCFAATIWKKLCQEDPLSLTAGTALRTKVLQHGGSKEPAELLNDLVGEGI LKHCDGGIVPDITCFLEESRLVVGSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	0	1
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	1.00	0.9646
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	5.47	0.9483
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	5.74	0.9442
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	6.24	0.9236
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	6.48	0.9374
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	8.94	0.9427
AT5G22050			Protein kinase superfamily pro...		Potri.001G215000 [exp]	8.94	0.9097
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.006G073000 [exp]	9.11	0.8964
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	9.48	0.9337
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	9.59	0.9432

Compare expression of checked genes

Potri.015G129300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.