Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25290 808 / 0 DNA photolyases;DNA photolyases (.1) AT4G36530 121 / 5e-30 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 122 / 6e-30 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 96 / 3e-21 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G13800 86 / 3e-17 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT5G24850 72 / 5e-13 CRY3 cryptochrome 3 (.1) AT2G47590 69 / 3e-12 PHR2 photolyase/blue-light receptor 2 (.1) AT3G15620 51 / 3e-06 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT4G33180 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 49 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121000 [exp] 128 / 4e-32 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 117 / 3e-28 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 101 / 9e-23 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G054800 [exp] 94 / 9e-20 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.014G128500 [exp] 70 / 3e-12 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.002G204000 [exp] 68 / 1e-11 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.006G277500 [exp] 66 / 8e-11 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.010G158800 [exp] 56 / 5e-08 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G027300 [exp] 46 / 8e-05 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031137 [exp] 867 / 0 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10031716 [exp] 780 / 0 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10028315 [exp] 135 / 2e-34 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 124 / 4e-29 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10041763 [exp] 120 / 4e-29 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 96 / 7e-21 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10005320 [exp] 88 / 4e-18 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10019755 [exp] 88 / 6e-18 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10020878 [exp] 74 / 1e-13 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10007880 [exp] 64 / 2e-10 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00875 [poplar] [flax] DNA_photolyase DNA photolyase CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.015G129500.1 pacid=42774914 polypeptide=Potri.015G129500.1.p locus=Potri.015G129500 ID=Potri.015G129500.1.v4.1 annot-version=v4.1 ATGTCTCTCCTTTCTCTCCCTCGCTCTTTCTTCTCCCTCTCCCTCTCTTCGCCGTCTCACGCGATCACTTCCCGCAGAAACCGATGCTTCAGCTGCTCTC TCTCTGTTTCTAAAACAAGCAACGCCACCTCGCCTGCGATTCTCTGGTTCAAGCAGGATCTTCGTCTCGATGACCACCCTGGCCTTCTACAAGCTTCCAA GTTTCCTGCTTTACTCCCTCTTTACGTTTTCGATCACCGTATTCTCTCCCGTTACAATGATGAGAAGCTAGAACTGGTTCTTTTTGCGTTGGAAGATTTA AGAAAGTCACTAAAGAAGCAAGGGTCTAATTTGATTATCAGGTTTGGGAATGCAGAAAATGTGATAAAAGAGCTTGTACTAGAGGTGAAAGCTGCAAATG TGTTTGCGGAAGTGGAGGTGGAGTATCACTTGCGGGAGATAATACATGCTGTGGAAGAGACATTAGTGAGGATGCCTTCGTTTGATAGGAGTCCGGAGAT TGTGTTGTGGCAGACTCCGTTTTATGATATTAAGAATCTGAAGGACTTCCCTGCTTCGTACGATGAGTTTGAGAAGCTTCAATTGGCTGTAACTTCACCT CTTCTGCCATCAAGATTGCCTAGTGCAGAAATGGAACTGGACTGGGGTTTGCTACCCACTTTGGATAACTTGAAGAAGTTTGTGAATGAAAGTCCTTCCA AATTGAATGAAAGTTGGGCTTTGCTCAAGGAGATGTCAAGTGAAACCATATTGCAGAAGCAATTATCAAAGTCAGGGAAAGTAAGTTTGAATAATTCAAA TTTCAAGCATTCCAAGAGGAAGAGACTGGATAAATCTGTTTTTGTTACACAAAAGCAAAATGTTGTGGGTGGTGGGACAAACAGTGTGCTTAATGCATTG GCTGCATACTTGAGATATTTGGAGGGAACTGCTCGGGATGACTGGCAAGAGGTACATGAGAAATTGCGAACTGCTGAAATTCGTGATGGAGCTTCATTTT TTGCGCTCTTTGGCCCTGCCCTTTGTCTTGGTATCATATCTAGAAGGAGAGTTTATTATGAATCAATTAAATACGAGAAAGAACGAAATGCTGGGTTTCT ATCACCCTTTGGATATTCAACTGCCACAGTTTCTGCTTCAGCTGACACAGTGTGCTCAATGGAGTGGTATTGGCTTCTGCTTTTAAAAAGTCAATTAAGT GATGAAGGAGCGTATCCTATTTGGATATGGAGATGGAATGGTTATCTAATTCAGTATACAGTTGTTGGCAATAGAGGCCCTGCTGTTCTTCTCGTTCATG GTTTTGGTGCATTTTTGGAGCACTTTCGTGACAATATAAGTAGTATATCTAATGATGGGAACCGAGTTTGGGCTGTCACGGTTCTAGGATTTGGCAAATC AGAGAAACCAAATGTTGTGTATACTGAACTTATGTGGGCTGAATTGGTGAGAGATTTTATAATTGAAGTTGTCGGTGAACCAGTGCATCTCATGGGAAAC TCTATTGGTGGCTATTTTGTAGCTCTTGTCGCCTACTTTTGGCCTGCTTTAGCCCAGTCTGTTGTCCTTATCAATAGCGCTGGGGATATTATTCCAGCAT ATACTTCTCCGCAATTCACCAAAGTGAGAGCGACTTCAGGGGCTACGTGGCTTGGTGCTCGACTCCTTTTGTTTTACTTGAGGCTGGGTTTGGGAAGCAT AGTAAAGAATTGCTACCCAACTAAAACTGAGAGAGTTGATGATTGGCTTATTAATGAAATGCTAAGAGCTTCTTATGATCCTGGTGTCCTAGTGGTACTA GAAAGTATTTTCAGTTTCAATCTTTCACTTGCTCTTAATTATCTCTTGGAAGGCTTCGAAGGCAAGGTTCTAATCATACAGGGAATGAAAGATCCTATAA CTGACTCCAAGTCTAAAGTGGCTATGCTCAAAGAACACTGTCCTGGGGTCGTCATCAGGGAATTGGATGCTGGCCACTGTCCTCACGATGAGAAACCAGA AGAGGTAAATTCTATAATTTCTCAATGGATATTGACAATAGAAAGTAGAGTTCTCTCTCAAGCCTGTTCATAG
AA sequence Show only first row Show all	>Potri.015G129500.1 pacid=42774914 polypeptide=Potri.015G129500.1.p locus=Potri.015G129500 ID=Potri.015G129500.1.v4.1 annot-version=v4.1 MSLLSLPRSFFSLSLSSPSHAITSRRNRCFSCSLSVSKTSNATSPAILWFKQDLRLDDHPGLLQASKFPALLPLYVFDHRILSRYNDEKLELVLFALEDL RKSLKKQGSNLIIRFGNAENVIKELVLEVKAANVFAEVEVEYHLREIIHAVEETLVRMPSFDRSPEIVLWQTPFYDIKNLKDFPASYDEFEKLQLAVTSP LLPSRLPSAEMELDWGLLPTLDNLKKFVNESPSKLNESWALLKEMSSETILQKQLSKSGKVSLNNSNFKHSKRKRLDKSVFVTQKQNVVGGGTNSVLNAL AAYLRYLEGTARDDWQEVHEKLRTAEIRDGASFFALFGPALCLGIISRRRVYYESIKYEKERNAGFLSPFGYSTATVSASADTVCSMEWYWLLLLKSQLS DEGAYPIWIWRWNGYLIQYTVVGNRGPAVLLVHGFGAFLEHFRDNISSISNDGNRVWAVTVLGFGKSEKPNVVYTELMWAELVRDFIIEVVGEPVHLMGN SIGGYFVALVAYFWPALAQSVVLINSAGDIIPAYTSPQFTKVRATSGATWLGARLLLFYLRLGLGSIVKNCYPTKTERVDDWLINEMLRASYDPGVLVVL ESIFSFNLSLALNYLLEGFEGKVLIIQGMKDPITDSKSKVAMLKEHCPGVVIRELDAGHCPHDEKPEEVNSIISQWILTIESRVLSQACS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25290			DNA photolyases;DNA photolyase...		Potri.015G129500 [exp]	0	1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.004G036200 [exp]	1.73	0.9058
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	14.69	0.8886
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	17.20	0.8794
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.016G040200 [exp]	20.09	0.8911	LYC.2
					Potri.006G132951 [exp]	21.49	0.8755
AT3G48200			unknown protein		Potri.015G079000 [exp]	24.67	0.8737
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023010 [exp]	30.85	0.8685
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	33.16	0.8711
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	35.32	0.8517
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	38.01	0.8756

Compare expression of checked genes

Potri.015G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.