Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPS20.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62300 223 / 1e-76 Ribosomal protein S10p/S20e family protein (.1.2) AT3G45030 223 / 1e-76 Ribosomal protein S10p/S20e family protein (.1) AT3G47370 217 / 3e-74 Ribosomal protein S10p/S20e family protein (.1.2.3) AT3G13120 52 / 6e-09 Ribosomal protein S10p/S20e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128300 [exp] 247 / 4e-86 AT5G62300 222 / 2e-76 Ribosomal protein S10p/S20e family protein (.1.2) Potri.002G146600 [exp] 208 / 1e-70 AT3G47370 204 / 1e-69 Ribosomal protein S10p/S20e family protein (.1.2.3) Potri.002G116900 [exp] 127 / 3e-39 AT3G47370 125 / 4e-39 Ribosomal protein S10p/S20e family protein (.1.2.3) Potri.001G365600 [exp] 54 / 2e-09 AT3G13120 237 / 4e-80 Ribosomal protein S10p/S20e family protein (.1.2) Potri.011G092800 [exp] 53 / 4e-09 AT3G13120 231 / 1e-77 Ribosomal protein S10p/S20e family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031705 [exp] 213 / 2e-72 AT5G62300 211 / 5e-72 Ribosomal protein S10p/S20e family protein (.1.2) Lus10031706 [exp] 211 / 1e-71 AT3G45030 202 / 7e-69 Ribosomal protein S10p/S20e family protein (.1) Lus10031126 [exp] 210 / 2e-71 AT3G45030 207 / 2e-70 Ribosomal protein S10p/S20e family protein (.1) Lus10038910 [exp] 206 / 1e-69 AT5G62300 210 / 8e-72 Ribosomal protein S10p/S20e family protein (.1.2) Lus10027194 [exp] 204 / 1e-68 AT5G62300 207 / 2e-70 Ribosomal protein S10p/S20e family protein (.1.2) Lus10031125 [exp] 110 / 4e-32 AT5G62300 113 / 6e-34 Ribosomal protein S10p/S20e family protein (.1.2) Lus10016604 [exp] 56 / 4e-10 AT3G13120 240 / 3e-81 Ribosomal protein S10p/S20e family protein (.1.2) Lus10007111 [exp] 54 / 4e-09 AT3G13120 226 / 3e-75 Ribosomal protein S10p/S20e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00338 [poplar] [flax] Ribosomal_S10 Ribosomal protein S10p/S20e
Representative CDS sequence Show only first row Show all	>Potri.015G129800.2 pacid=42776451 polypeptide=Potri.015G129800.2.p locus=Potri.015G129800 ID=Potri.015G129800.2.v4.1 annot-version=v4.1 ATGTGTGATATTGAATGGTTTGTGTTCATCGTTTGTTTTGTTTTTGTGATAAAAAAGCGAACGGAGAAAATGGCAGCAGCTTATGGAGCTATGAAGGCGC AGAAGCCGGGCTTGGAGGAGGCCCAGGAGCAGATTCACAAGATCAGGATCACTCTTTCCTCCAAGAATGTCAAAAACCTTGAGAAAGTTTGCACTGACTT GGTTCGTGGTGCCAAGGATAAGAGACTGAGGGTCAAGGGACCAGTGAGAATCCCTACCAAGGTTCTTAACATTACCACCAGGAAATCCCCTTGTGGTGAA GGAACCAATACATGGGACAGATTTGAGCTTCGTGTCCACAAGCGTGTAATTGATCTCTTCAGTTCTGCTGATGTTGTTAAGCAGATCACCTCTATCACAA TTGAACCTGGTGTTGAGGTTGAAGTTACCATTGCTGATTAG
AA sequence Show only first row Show all	>Potri.015G129800.2 pacid=42776451 polypeptide=Potri.015G129800.2.p locus=Potri.015G129800 ID=Potri.015G129800.2.v4.1 annot-version=v4.1 MCDIEWFVFIVCFVFVIKKRTEKMAAAYGAMKAQKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRIPTKVLNITTRKSPCGE GTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62300			Ribosomal protein S10p/S20e fa...		Potri.015G129800 [exp]	0	1	RPS20.2
AT3G52580			Ribosomal protein S11 family p...		Potri.011G080500 [exp]	2.23	0.9310	Pt-RPS14.3
AT5G62300			Ribosomal protein S10p/S20e fa...		Potri.012G128300 [exp]	3.60	0.9527	Pt-RPS20.1
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.005G206300 [exp]	5.19	0.9350	Pt-RPS12.3
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.008G171200 [exp]	8.48	0.9332	RPL23.4
AT3G56340			Ribosomal protein S26e family ...		Potri.019G057000 [exp]	8.60	0.9408	RPS26.2
AT3G50860			Clathrin adaptor complex small...		Potri.007G025400 [exp]	8.94	0.8796
AT4G29735			unknown protein		Potri.004G215200 [exp]	12.40	0.9046
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.002G135600 [exp]	14.28	0.9099
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.005G087100 [exp]	14.69	0.8719
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.002G140400 [exp]	15.65	0.9253	Pt-RPS11.5

Compare expression of checked genes

Potri.015G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.