Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPS13.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00100 283 / 7e-100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosomal protein S13A (.1) AT3G60770 282 / 2e-99 Ribosomal protein S13/S15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146800 [exp] 299 / 4e-106 AT3G60770 287 / 1e-101 Ribosomal protein S13/S15 (.1) Potri.012G128600 [exp] 296 / 3e-105 AT4G00100 288 / 6e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Potri.014G068600 [exp] 295 / 1e-104 AT3G60770 291 / 4e-103 Ribosomal protein S13/S15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038908 [exp] 295 / 2e-104 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10027192 [exp] 295 / 2e-104 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10031704 [exp] 275 / 2e-96 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10031124 [exp] 275 / 2e-96 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [poplar] [flax] S15_NS1 PF00312 [poplar] [flax] Ribosomal_S15 Ribosomal protein S15 CL0600 [poplar] [flax] PF08069 [poplar] [flax] Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G130000.1 pacid=42775945 polypeptide=Potri.015G130000.1.p locus=Potri.015G130000 ID=Potri.015G130000.1.v4.1 annot-version=v4.1 ATGGGTCGTATGCACAGTCACGGTAAGGGTATTTCAGCTTCAGCTTTGCCTTACAAGAGAACCCCACCAAGCTGGCTTAAGATTTCTGCTCAAGATGTTG AGGATAACATCTGCAAATTTGCAAAGAAGGGTTTGACTCCATCTCAGATTGGTGTCATTCTTCGTGACTCTCACGGTATTGCTCAGGTCAGGAGTGTTAC TGGAAACCAGATCTTGCGTATCCTTAAGGCTCATGGTCTTGCCCCTGAAATTCCTGAGGATCTGTACCACCTCATCAAGAAAGCTGTTGCCATCAGAAAG CATTTGGAAAGGAACAGGAAGGATAAGGATTCCAAGTTCAGGTTGATCCTTGTCGAGAGCAGAATTCACAGGCTTGCTCGCTACTACAAGAAGACAAAGA AGCTTCCTCCTGTCTGGAAATACGAATCATCCACTGCCAGCACGCTGGTGGCTTAG
AA sequence Show only first row Show all	>Potri.015G130000.1 pacid=42775945 polypeptide=Potri.015G130000.1.p locus=Potri.015G130000 ID=Potri.015G130000.1.v4.1 annot-version=v4.1 MGRMHSHGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNQILRILKAHGLAPEIPEDLYHLIKKAVAIRK HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESSTASTLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	0	1	RPS13.4
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.002G202800 [exp]	1.41	0.9256	RPL18.9
AT5G45775			Ribosomal L5P family protein (...		Potri.006G181501 [exp]	2.82	0.9076
AT5G24510			60S acidic ribosomal protein f...		Potri.002G179400 [exp]	4.89	0.9148
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.001G311000 [exp]	6.48	0.8825
AT1G06200			Peptidase S24/S26A/S26B/S26C f...		Potri.002G037900 [exp]	7.48	0.8403
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.008G207000 [exp]	10.39	0.8624	RPL3.2
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.019G131200 [exp]	11.31	0.8823	EIF2.2
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	11.61	0.8508
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Potri.007G074042 [exp]	16.06	0.8520
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	16.30	0.8602

Compare expression of checked genes

Potri.015G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.