Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51560 940 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 754 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 700 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22130 216 / 7e-61 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G60800 205 / 3e-57 NIK3 NSP-interacting kinase 3 (.1) AT1G09970 204 / 2e-55 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G34220 196 / 4e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 189 / 3e-51 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 187 / 1e-50 RKL1 receptor-like kinase 1 (.1) AT1G16670 175 / 1e-48 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128700 [exp] 1151 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 851 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 839 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 779 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 743 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 218 / 4e-62 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 214 / 1e-60 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.003G074000 [exp] 201 / 3e-54 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 196 / 1e-52 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031703 [exp] 935 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 931 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 691 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 691 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 673 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 586 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031702 [exp] 273 / 3e-88 AT5G51560 258 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) Lus10034350 [exp] 209 / 6e-59 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10003612 [exp] 211 / 3e-57 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005103 [exp] 201 / 1e-55 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G130100.2 pacid=42775233 polypeptide=Potri.015G130100.2.p locus=Potri.015G130100 ID=Potri.015G130100.2.v4.1 annot-version=v4.1 ATGGGTTTTGCTGTTTTTCTCTTTGGTTTCTTTCTTTTACTGTCAAAGCCAAATTGGGTTCTTGCAAATACTGAGATCGGGGCACTCATGGATATGAAAG CTGCTTTAGACCCAGAAAACAGGTACCTGACTTCATGGACCATTAATGGCAGCCCATGTGATGGTTCATTTGAAGGTGTTGCTTGTAATGAGAAGGGTCA AGTAGCTAATATTTCACTGCAAGGAAAAGGGCTTTACGGGAAGGTGTCTCCTGCTATTGCTGGGTTAAAACACTTGACTGGTTTGTATTTGCATTTTAAC TCCTTGTATGGAGATGTACCAAGAGAAATAGCTAACTTGACTGAGCTAAGTGATTTGTACTTGAATGTGAATAATCTGTCTGGGGATATACCTCCTGAGA TTGGAATCATGGCCAATTTGCAAGTTTTGCAGCTTTGTTATAACCAGTTCACAGGAAGTATACCTACTGAGATGGGGTCTTTGGAGAAGCTTAGTGTTCT TACTTTGCAGTCAAATCATCTCACTGGAGCAATCCCTGCGAGTTTAGGGGGTTTGGGGATGTTAATGAGGCTAGATTTGAGCTACAATCACTTATTTGGT TCAATTCCAACAAAAGTAGCCGATGCTCCTCTGCTTGAATTTCTAGATATCCGAAATAACACACTCTCTGGCAATGTACCTCTAGCTCTTAAGAGATTGA ATGATGGATTCCTGTATGAAAACAACTTGGGATTGTGTGGAGCTGGGTTTGTGTCTCTGAATGCTTGCAATGCTTCAGAACTTAATCCAAGCAGACCCGA ACCCTTTGGAACTGGTGTAAATGGTCTGCCAAGAGAGATCCCAGAAACAGCAAGTTTGCCGTTGCTATGCAACCAAACTCACTGTTCAAACCCGTCAAAG TCCCATCACGCATCGGCTGCTGTTGCTACAGTTGTCATAACGATTTTACTGGCAGCCATAGGAATTCTGACATTTACCCAGTATCGCCGCCGGAAACAGA AGCTTGCTAGCTCATATGAAGTTTCTGATAGCCGCCTAAGTACTGACCAGGCAAAGGGAGCTTACAGGAAGAATGGCTCTCCTCTAATCAGTCTCGAGTA TCCTAATGGATGGGACCCTTTAGCTGATGGCAGGAATTTAAGTGGGAATGCCCAGGATGTCTTCCAAAGTTTCAGGTTCAACTTGGAAGAGGTGGAGACT GCCACACAGTACTTCTCGGAGGTCAATTTGTTGGGTAAGAGTAACTTTTCTGCAACATACCGAGGAATTTTAAGAGATGGGTCTGTTGTTGCTATCAAGA GCATTAGTAAAAACAGCTGCAAGTCAGAGGAGACTGAGTTCTTGAAGGGGCTGAATACTTTGACATCACTGAGGCATGAGAATTTAGTGAGGTTGAGAGG ATTCTGCTGTTCAAGGGGCCGAGGGGAGTGCTTTCTCATTTATGATTTTGTTCCCAATGGTAATCTGCTGAGGTATCTTGATGTGAAGGATGGGGATGGC CACGTGCTTGAATGGTCCACCAGAGTTTCAATCGTCAGGGGTATCGCCAAAGGTATAGCATACTTGCATGGGTACAAAGCGAACAAACCATCTCTGATCC ACCAAAACATCACTGCTGAAAAGGTCCTAATTGACCAGCGATGCAGTCCGTTGCTCGCAGATTCTGGCTTGCAAAACCTTCTTACGAATGACATCGTGTT CTCAGCACTCAAAACCAGTGCTGCCATGGGGTACCTAGCTCCTGAGTACACTACCACAGGCCGGTTCACAGACAAAAGTGACGTGTACGCATTTGGAGTG ATAGTTTTCCAAGTTCTCTCAGGGAAGCGAAAAGTGACTGACTTGGTACGTCTTGGAGCAGATGCATGCAGATTCCAAGATTATATTGACCCCAATCTCC ATGGCAGATTCTTCGAATATGAAGCAGCTAAGCTTGCAAGAATCGCTTGGCTTTGCACTCACGAGTCTCCCATTGAAAGACCATCTACGGAAGCAGTTGT TCATGAACTAGGTAACTGTAGTAGCTGTCTCTAG
AA sequence Show only first row Show all	>Potri.015G130100.2 pacid=42775233 polypeptide=Potri.015G130100.2.p locus=Potri.015G130100 ID=Potri.015G130100.2.v4.1 annot-version=v4.1 MGFAVFLFGFFLLLSKPNWVLANTEIGALMDMKAALDPENRYLTSWTINGSPCDGSFEGVACNEKGQVANISLQGKGLYGKVSPAIAGLKHLTGLYLHFN SLYGDVPREIANLTELSDLYLNVNNLSGDIPPEIGIMANLQVLQLCYNQFTGSIPTEMGSLEKLSVLTLQSNHLTGAIPASLGGLGMLMRLDLSYNHLFG SIPTKVADAPLLEFLDIRNNTLSGNVPLALKRLNDGFLYENNLGLCGAGFVSLNACNASELNPSRPEPFGTGVNGLPREIPETASLPLLCNQTHCSNPSK SHHASAAVATVVITILLAAIGILTFTQYRRRKQKLASSYEVSDSRLSTDQAKGAYRKNGSPLISLEYPNGWDPLADGRNLSGNAQDVFQSFRFNLEEVET ATQYFSEVNLLGKSNFSATYRGILRDGSVVAIKSISKNSCKSEETEFLKGLNTLTSLRHENLVRLRGFCCSRGRGECFLIYDFVPNGNLLRYLDVKDGDG HVLEWSTRVSIVRGIAKGIAYLHGYKANKPSLIHQNITAEKVLIDQRCSPLLADSGLQNLLTNDIVFSALKTSAAMGYLAPEYTTTGRFTDKSDVYAFGV IVFQVLSGKRKVTDLVRLGADACRFQDYIDPNLHGRFFEYEAAKLARIAWLCTHESPIERPSTEAVVHELGNCSSCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51560			Leucine-rich repeat protein ki...		Potri.015G130100 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	3.00	0.9386
AT5G50175			unknown protein		Potri.015G083900 [exp]	4.89	0.9157
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	5.83	0.9337
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.013G124400 [exp]	7.41	0.9132
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	9.16	0.9276
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	10.95	0.9226	AGP20.1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	10.95	0.9130	Pt-BGAL3.1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	14.89	0.9206
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	17.97	0.9081
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	18.54	0.9240

Compare expression of checked genes

Potri.015G130100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.