Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 75 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 48 / 4e-06 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G11650 44 / 0.0001 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G13860 40 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 42 / 0.0005 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G71770 42 / 0.0005 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116400 [exp] 80 / 2e-16 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 77 / 1e-15 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 74 / 2e-14 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 72 / 6e-14 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G178200 [exp] 47 / 8e-06 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.005G198500 [exp] 47 / 1e-05 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.014G104500 [exp] 44 / 6e-05 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G062700 [exp] 44 / 7e-05 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028162 [exp] 72 / 5e-14 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 71 / 2e-13 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 69 / 1e-12 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002689 [exp] 49 / 3e-06 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 49 / 4e-06 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10043390 [exp] 46 / 2e-05 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 42 / 0.0003 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014029 [exp] 42 / 0.0004 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10016639 [exp] 40 / 0.0007 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.015G130701.1 pacid=42774987 polypeptide=Potri.015G130701.1.p locus=Potri.015G130701 ID=Potri.015G130701.1.v4.1 annot-version=v4.1 ATGGAATCACTTGGGTATTTGGATGACTTTTCTGGAGTTCAAGAAGGAAGTAATGAGGATGGAAAGAGCGCATGCGAAAGGGAGAGCATAGCTTGTGCAC AAGATAATGAAGTTAACAATGGCATGAAATCACCAGGGCCTGCGGGTGAATCTATTGGAGACCAAGATGATGGCGATGAAGAACTGAGGAGTGCAGATGA TAAGGAAGATGATGGAGATGGTGAAGACAACAAACTCATGGAATCACTTGGACATTTGGATGACTGTACTGATGTCCAAGAAGGTTGTGATGAAGAAGGG GACATTGCAGATGATGTGGAAGATAATGAGGACAGTGATGATACCGAAGAGGTTGAAGATCCTTCTCTAACCAGCTCAGGGAAACAAAGGCAACTAGAAA TCCATGTGACAACTGTTCATGTTAAAGGGCTAGTGAAATCCTGGAATGTAAAGAAGCTGAAAGAGCTCTGCAAACAGTATGGAGAGATCATAAATGTTTT GTTACCTCGAAATTTTGGTGCTAAACACAAGGATTTTGGATTTATTGCTTTTAGTTCTCATAAAAGTGCACTTGCTTGTGTGGAAGGGATCAATAAGACC CAGCTTGGAGGAGAAACTAAGGTTAAGGCTGACCTTGCCAAGACAAGATTTAGAGGAGCAGCGCAGAAGAAAAGGAGATGGGGTAAACATCATGCAAAGT ACGAAGAGGTTGGGACTGAAATAAAAGCACAAGCTCATGGTAACAAGTCCAAGGGAACTAGAAAAAGAGGAAGGGGCATTGCTAAAGAAGAGATTCAAGC TCCTTCATTGTTGAATAGTACTAAAGAAGGTAAACCAAACAACCATCGAACCAGTTTCAGTGAAGGTCAGGATGCCAACTGA
AA sequence Show only first row Show all	>Potri.015G130701.1 pacid=42774987 polypeptide=Potri.015G130701.1.p locus=Potri.015G130701 ID=Potri.015G130701.1.v4.1 annot-version=v4.1 MESLGYLDDFSGVQEGSNEDGKSACERESIACAQDNEVNNGMKSPGPAGESIGDQDDGDEELRSADDKEDDGDGEDNKLMESLGHLDDCTDVQEGCDEEG DIADDVEDNEDSDDTEEVEDPSLTSSGKQRQLEIHVTTVHVKGLVKSWNVKKLKELCKQYGEIINVLLPRNFGAKHKDFGFIAFSSHKSALACVEGINKT QLGGETKVKADLAKTRFRGAAQKKRRWGKHHAKYEEVGTEIKAQAHGNKSKGTRKRGRGIAKEEIQAPSLLNSTKEGKPNNHRTSFSEGQDAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	0	1
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	1.73	0.9148
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	3.46	0.9065
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	4.47	0.8936
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	5.19	0.8770
AT5G18230			transcription regulator NOT2/N...		Potri.013G059800 [exp]	5.47	0.8711
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	5.74	0.8936
AT5G03110			unknown protein		Potri.016G086900 [exp]	6.00	0.9029
AT2G42040			unknown protein		Potri.006G193500 [exp]	6.00	0.8922
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	7.74	0.9063
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	7.93	0.9025

Compare expression of checked genes

Potri.015G130701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.