Plant FIBer expression Database

Potri.015G130800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12380 899 / 0 unknown protein
AT1G62870 894 / 0 unknown protein
AT1G79740 59 / 1e-08 hAT transposon superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G129100
[exp]
1387 / 0 AT1G12380 890 / 0.0 unknown protein
Potri.003G115900
[exp]
980 / 0 AT1G62870 1028 / 0.0 unknown protein
Potri.001G116600
[exp]
974 / 0 AT1G62870 1017 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004325
[exp]
863 / 0 AT1G62870 977 / 0.0 unknown protein
Lus10024556
[exp]
719 / 0 AT1G12380 797 / 0.0 unknown protein
Lus10032194
[exp]
717 / 0 AT1G12380 788 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G130800.1 pacid=42774775 polypeptide=Potri.015G130801.1.p locus=Potri.015G130800 ID=Potri.015G130800.1.v4.1 annot-version=v4.1
ATGGCTTCAACAAGTTCAACACCAAGTGACCCTTCCATTTCTCTGCATGAAGACACAGCAATCCGAGCTGTGAACAAGAGATATGAAGGGTTGATTACTG
TTAAAACAAAGGCAATAAAGGGTAAAGGGGCATGGTATTGGGCTCATTTAGAGCCAATTTTGATTAAAAACCCTGATACAAATCTCCCTAAAGCAGTTAA
ACTTAAGTGTTGTTTATGTGAAGCTGTTTTTTCTGCTTCAAACCCATCAAGAACTGCCACTGAACATCTCAAAAAAGGAACTTGTTCTAATTTTGTATCA
GTTTCAAGGCCCAATTCAGCAATTTCTCCATTGCCTATATCTTCTTTGCCTTCCCCACCTTCAAATAATCATAGAAAGAGAAGCTCTCAAATGGGTACTG
CTTTAAAGTCTCTAGCTTTAGTCGAGTCAAATAAATACTGCGACCAAGTTGGTTACTTTAATTCTGGGTTTACTCCAAAAGGTCACGATTTGGTGTTATC
TGGTGGAAAAGAGGATTTAGGTGCATTAGCAATGTTGGAAGATAGTGTAAAGAGGCTTAAAAGTCCAAAAGCCTCACCTGGTCCTTTGTTAAACAAGGAA
CAGGTTGATTCTGCTCTTGAGTTATTGAGTGATTGGTTTTATGAGGTTTGCGGGTCAGTATCATATTCAAGTCTTGAGCATCCGAAGTTTAGGGCTTTTC
TTAATCAAGTTGGTTTGCCTTGTTTGTCAAGGAGAGGCTTGTCTGGTGCTAGACTTGACAATAGGTTTCACGAGGCAAAATCTGAGGTGGAAGCTAGAAT
TAGAGATGCCATGTTCTTTCAAGTTGCGTGTAATGGATGGAAGAGTAATAATTGTTGTAGTGGGGAAGATAATTTGGTTAAGTTCAGTGTAAATCTTCCA
AATGGAACTATTTTGTATCACAAGGCAGTGTTAACTGGAGGAGGATCAGTGTCGTCTAAGTATGCAGAGGAGATTATGTGGGAGGCAGTGACGGGGATAT
GTGGTAGTGGTTTGCAGAGATGTGTGGGGATAGTTTCTGATGAGTACAAGGCTGAGGCATTGAGGAACTTGGAGATCCAGTATCAGTGGATGGTGAATCT
CCCTTGTCAGGTTCAGGGGTTTACTAGTTTGATCAAGGATTTTAGCAAGGAGCATCAACTTTTCAAGACTGTTACTGAGAATTGCTTGAAGCTTGCTAAT
TTTGTAAATAATACATCTCAAGTTAGGAATAGCTTCCAGAAGTACAGGATGCAAGAGCTTGATTACACTGGGTTGCTTCGAGTTCCTTGGTGCAAATGTG
ATGGTGCAAAGGACTTTGTACCTGTTTATGCAATGTTGGAGGATATATTGAGCTGTGCCCGTGTGCTCCAAATGGTTATCTTAGATGAGTCATATAAGTT
GATGAGTGTTGAGGATCCTGTCGCTAGAGAGGTCTCTGGGATGATTCAAAGTGAGGGCTTTTGGAATGAGTTGGAGGCTGTTTATTCACTAATGAAGCTC
ATCAGAGGGATGGCTCAAGAGATTGAGGCTGAGCGGCCATTGATAGGGCATTGCCTTCCTCTCTGGCAAGAACTGAAAGCAAAAGTGAAGGAATGGTGTG
CAAGATTCAATATCGCTGAAGGCCAAGTTGAGAAAATAGTTGAAAAGAGATTCAGAAAGAACTATCACCCAGCTTGGTCTGCTGCGTTTATACTCGACCC
TCGTTATTTGATGCGGGACACAAGTGGAAAATACCTTCCACCTTTCAAATGCTTGACGCTTGAGCAGGAAAAGGACGTGGATAAGCTTATAACCCGTTTG
GCTTCCAGGGAAGAAGCTCATGTTGCCTTAATGGAGCTTATGAAATGGAGATCAGATGGGTTAGACCCGCTGTATGCACAGGCTGTTCAGGTTAAACAGC
GAGACCCTTTGACTGGAAAGATGAAAATTGCAAATCCTCAAGGCAGCAGACTAGTATGGGAAACTTGTCTGAGTGAGTATAAAACATTAGGCAAGGTCGC
AGTTAGGCTCATCTTCCTCCATGCGACCTCAAGCGGGTTTAAGTGCAATTGGTCTAGCATGAAATGGTTTTGTGTCCACAGAAACTCAAGGGTGGGCCTT
GAAAGGGCTCAGAAGATGATATTCATCGCAGCTCATGCAAAGCTTGAAAGACGTGATTTCTCAAATGAAGAAGAAAAGGATGGAGAGCTGTTCCGCATGG
CAGGATGTGAAGATGACATGCTCAACGAAGTCTTTGTCGAGGCACCATCAGTGTAA
AA sequence
>Potri.015G130800.1 pacid=42774775 polypeptide=Potri.015G130801.1.p locus=Potri.015G130800 ID=Potri.015G130800.1.v4.1 annot-version=v4.1
MASTSSTPSDPSISLHEDTAIRAVNKRYEGLITVKTKAIKGKGAWYWAHLEPILIKNPDTNLPKAVKLKCCLCEAVFSASNPSRTATEHLKKGTCSNFVS
VSRPNSAISPLPISSLPSPPSNNHRKRSSQMGTALKSLALVESNKYCDQVGYFNSGFTPKGHDLVLSGGKEDLGALAMLEDSVKRLKSPKASPGPLLNKE
QVDSALELLSDWFYEVCGSVSYSSLEHPKFRAFLNQVGLPCLSRRGLSGARLDNRFHEAKSEVEARIRDAMFFQVACNGWKSNNCCSGEDNLVKFSVNLP
NGTILYHKAVLTGGGSVSSKYAEEIMWEAVTGICGSGLQRCVGIVSDEYKAEALRNLEIQYQWMVNLPCQVQGFTSLIKDFSKEHQLFKTVTENCLKLAN
FVNNTSQVRNSFQKYRMQELDYTGLLRVPWCKCDGAKDFVPVYAMLEDILSCARVLQMVILDESYKLMSVEDPVAREVSGMIQSEGFWNELEAVYSLMKL
IRGMAQEIEAERPLIGHCLPLWQELKAKVKEWCARFNIAEGQVEKIVEKRFRKNYHPAWSAAFILDPRYLMRDTSGKYLPPFKCLTLEQEKDVDKLITRL
ASREEAHVALMELMKWRSDGLDPLYAQAVQVKQRDPLTGKMKIANPQGSRLVWETCLSEYKTLGKVAVRLIFLHATSSGFKCNWSSMKWFCVHRNSRVGL
ERAQKMIFIAAHAKLERRDFSNEEEKDGELFRMAGCEDDMLNEVFVEAPSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12380 unknown protein Potri.015G130800
[exp]
0 1
AT2G23450 Protein kinase superfamily pro... Potri.002G130600
[exp]
1.73 0.9094
AT2G40480 Plant protein of unknown funct... Potri.019G049201
[exp]
8.24 0.9044
AT3G54260 TBL36 TRICHOME BIREFRINGENCE-LIKE 36... Potri.008G020900
[exp]
10.48 0.8856
AT1G14890 Plant invertase/pectin methyle... Potri.010G109300
[exp]
10.95 0.8854
AT1G80690 PPPDE putative thiol peptidase... Potri.001G047800
[exp]
13.07 0.9004
AT5G61480 PXY, TDR TDIF receptor, PHLOEM INTERCAL... Potri.003G107600
[exp]
13.11 0.8888
AT2G41890 curculin-like (mannose-binding... Potri.006G053700
[exp]
14.69 0.8545
AT1G62050 Ankyrin repeat family protein ... Potri.004G013500
[exp]
18.97 0.8577
AT1G47670 Transmembrane amino acid trans... Potri.014G036500
[exp]
20.24 0.8759
AT5G06470 Glutaredoxin family protein (.... Potri.006G201300
[exp]
22.04 0.8778

Potri.015G130800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.