Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36530 811 / 0 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) AT1G74030 601 / 0 ENO1 enolase 1 (.1) AT2G29560 489 / 4e-171 ENOC cytosolic enolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116800 [exp] 827 / 0 AT2G36530 814 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.012G057500 [exp] 595 / 0 AT1G74030 810 / 0.0 enolase 1 (.1) Potri.009G040700 [exp] 514 / 0 AT2G29560 809 / 0.0 cytosolic enolase (.1) Potri.012G129300 [exp] 281 / 2e-93 AT2G36530 260 / 1e-85 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015028 [exp] 850 / 0 AT2G36530 802 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038904 [exp] 835 / 0 AT2G36530 792 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10002844 [exp] 806 / 0 AT2G36530 800 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10003374 [exp] 805 / 0 AT2G36530 799 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10035579 [exp] 776 / 0 AT2G36530 775 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10008647 [exp] 692 / 0 AT2G36530 687 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10027255 [exp] 613 / 0 AT1G74030 799 / 0.0 enolase 1 (.1) Lus10038963 [exp] 610 / 0 AT1G74030 808 / 0.0 enolase 1 (.1) Lus10040711 [exp] 480 / 3e-167 AT2G29560 789 / 0.0 cytosolic enolase (.1) Lus10016447 [exp] 435 / 4e-149 AT2G29560 713 / 0.0 cytosolic enolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0256 [poplar] [flax] Enolase_TIM PF00113 [poplar] [flax] Enolase_C Enolase, C-terminal TIM barrel domain CL0227 [poplar] [flax] Enolase_N PF03952 [poplar] [flax] Enolase_N Enolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G131100.1 pacid=42776595 polypeptide=Potri.015G131100.1.p locus=Potri.015G131100 ID=Potri.015G131100.1.v4.1 annot-version=v4.1 ATGGTAACGATCAAGGCTGTTAAAGCTCGTCAAATTTTTGACAGTCGTGGAAATCCCACCGTTGAAGCTGATATTTTGCTCTCTGATGGAAGCTATGCTA GAGCTGCCGTTCCAAGTGGTGCTTCCACTGGTGTCTATGAAGCTTTAGAGTTGAGAGATGGAGGATCAGATTATCTTGGGAAAGGTGTACTTAAGGCTGT AGGGAATGTCAATTCTATCATTGGACCAGCCTTGATTGGCAAGGACCCAACAGAGCAGGTTCAAATCGATAATTTCATGGTACAAGAGCTGGATGGAACT GTTAATGAATGGGGTTGGTGCAAGCAGAAGCTCGGAGCAAATGCTATATTGGCAGTGTCACTTGCTGTTTGCAAAGCAGGTGCAATGGTTAAGAAGATCC CTCTTTACCAGCACATTGCAAATCTTGCTGGAAACAAGACCTTGGTTTTGCCAGTACCTGCATTCAATGTCATCAATGGAGGTTCCCATGCTGGAAATAA ACTGGCAATGCAGGAATTCATGATTCTCCCTGTTGGGGCATCATCTTTCAAGGAAGCCATGAAAATGGGTGTAGAAGTGTATCATCACCTGAAGTCTGTG ATTAAGAAGAAGTATGGACAAGATGCCACCAATGTTGGTGATGAAGGTGGCTTTGCTCCTAATATTCAGGAAAACAAAGAGGGTCTTGAACTGCTCAAGA CAGCGATAGCCAAAGCTGGATATACTGGAAAGGTTGTGATTGGGATGGATGTTGCTGCGTCAGAGTTTTATAATGACAAGGACAAGACCTATGATTTGAA TTTCAAGGAAGAGAACAATGATGGATCACAGAAGATATCTGGAGACAGTCTAAAGAATGTATACAAGTCATTTGTGGCTGATTATCCAATTGTGTCCATC GAGGATCCATTTGATCAAGATGATTGGGAACACTATGCTAAGATGACTGGTGAAGTTGGTGAACAGGTGCAAATTGTTGGTGATGATCTACTTGTCACAA ACCCCAAGCGTGTGGAGAAAGCAATTAAGGAGAAGTCCTGCAATGCCCTTCTATTGAAGGTGAATCAAATTGGTTCTGTAACTGAAAGTATTGAAGCTGT GAAAATGTCTAAACATGCTGGCTGGGGTGTCATGGCAAGCCACAGAAGTGGTGAAACTGAGGATACTTTCATTGCAGACCTTTCAGTTGGATTGTCTACT GGACAGATCAAGACTGGAGCTCCTTGCAGATCAGAACGTCTTGCAAAATACAACCAGCTTCTCAGGATAGAGGAAGAGCTGGGATCTGCAGCAGTATATG CAGGAGCAAAATTCAGGGCACCAGTTGAACCTTACTAA
AA sequence Show only first row Show all	>Potri.015G131100.1 pacid=42776595 polypeptide=Potri.015G131100.1.p locus=Potri.015G131100 ID=Potri.015G131100.1.v4.1 annot-version=v4.1 MVTIKAVKARQIFDSRGNPTVEADILLSDGSYARAAVPSGASTGVYEALELRDGGSDYLGKGVLKAVGNVNSIIGPALIGKDPTEQVQIDNFMVQELDGT VNEWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKSV IKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVADYPIVSI EDPFDQDDWEHYAKMTGEVGEQVQIVGDDLLVTNPKRVEKAIKEKSCNALLLKVNQIGSVTESIEAVKMSKHAGWGVMASHRSGETEDTFIADLSVGLST GQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGAKFRAPVEPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.015G131100 [exp]	0	1
AT5G25265			unknown protein		Potri.018G023100 [exp]	4.35	0.7876
AT1G16560			Per1-like family protein (.1.2...		Potri.007G065800 [exp]	14.38	0.8426
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.013G111400 [exp]	17.02	0.8228
AT2G42910			Phosphoribosyltransferase fami...		Potri.002G059700 [exp]	18.38	0.7958
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.010G099900 [exp]	21.44	0.8134
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.012G075500 [exp]	25.41	0.7741
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	27.92	0.7807
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.018G082600 [exp]	34.07	0.8049
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.004G146350 [exp]	39.87	0.7647
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	45.34	0.8062	Pt-TTN1.1

Compare expression of checked genes

Potri.015G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.