Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22660 300 / 9e-102 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031698 [exp] 317 / 2e-108 AT3G22660 316 / 3e-108 rRNA processing protein-related (.1) Lus10036936 [exp] 297 / 1e-100 AT3G22660 281 / 1e-94 rRNA processing protein-related (.1) Lus10031120 [exp] 297 / 6e-99 AT3G22660 289 / 9e-96 rRNA processing protein-related (.1) Lus10037050 [exp] 224 / 4e-72 AT3G22660 220 / 4e-71 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05890 [poplar] [flax] Ebp2 Eukaryotic rRNA processing protein EBP2
Representative CDS sequence Show only first row Show all	>Potri.015G131200.1 pacid=42775924 polypeptide=Potri.015G131200.1.p locus=Potri.015G131200 ID=Potri.015G131200.1.v4.1 annot-version=v4.1 ATGGTGGTAAACAAGGAAGAATTGACCCTGTCTGATGAGGAGCTGATAACAGATGATGAAATGGATAATCTTGATGAAAAATTGTCTGGATCTGAGTCAG AATCGGAGGATGAAGATGTGAAGTTGCCTGAACCATCTAAAAATGCTATATTCAATAGAGATGGTCTTGCTGACAAGCTTCAAGACATTAGTTGGCCAGA GAATGTTGGATGGATCCACAAACTTGTGATCGACTTCAATCAAGAGCAAGAGGTGGACGTGAATGATGACCTGACCAGAGAGCTTGCTTTTTACACACAA GCCTTAGAGGGAACAAGGCAGGCATATGCTAAGCTAGAGTCGATGGGGATTCCTTTTCTCAGGCCTCCTGATTATTATGCTGAGATGGCAAAGTCGGATA CTCATATGGAGAAAGTGAAGGGCCGGCTTTTGGCAGAGAAGAGAAGCATTGAGGAGGCTGAGGAGAGAAGGAAAGCTAGAGACTCTAAGAAACTAGCTAA AGAGGTTCAGGCCCAGAAGCAGAAAGAGAGAAATGCACAGAAAAAGGCAGCGATAGAGACTGTTAAGAACTGGAGGAAACAGAGGAAACAAAGTGGGTTT GCTGGAGGCGACAAGGATGGTGAGTTGGATATGCCCTTTGAAGATGGAAAAGTGTTTGAAAGGTCGAACAAGAAGAGGCCAGGGGTGTCTCCAGGAGATC GGTCTGGAGGGAAGGGGAGACAACCTTGGAAGAAGGGGAAAAACGGACCAGAAAAGAAAAAATTCAAGAGGGAATCAAGGGATTCCAAATTTGGATTTGG AGGGAGGAAAGGTTTAAAGAAGCAGAACACTGCTGACACCACTGATGATTTTAGAGGCTCCAAGAAAGGCAGTGCTGCCGGAAATAAGAAAAGGAAGAGG TGA
AA sequence Show only first row Show all	>Potri.015G131200.1 pacid=42775924 polypeptide=Potri.015G131200.1.p locus=Potri.015G131200 ID=Potri.015G131200.1.v4.1 annot-version=v4.1 MVVNKEELTLSDEELITDDEMDNLDEKLSGSESESEDEDVKLPEPSKNAIFNRDGLADKLQDISWPENVGWIHKLVIDFNQEQEVDVNDDLTRELAFYTQ ALEGTRQAYAKLESMGIPFLRPPDYYAEMAKSDTHMEKVKGRLLAEKRSIEEAEERRKARDSKKLAKEVQAQKQKERNAQKKAAIETVKNWRKQRKQSGF AGGDKDGELDMPFEDGKVFERSNKKRPGVSPGDRSGGKGRQPWKKGKNGPEKKKFKRESRDSKFGFGGRKGLKKQNTADTTDDFRGSKKGSAAGNKKRKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22660			rRNA processing protein-relate...		Potri.015G131200 [exp]	0	1
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	1.00	0.8444
AT5G48240			unknown protein		Potri.014G170500 [exp]	3.16	0.8240
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.017G101200 [exp]	3.46	0.8013
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Potri.001G369500 [exp]	3.46	0.8086	Pt-ATRPAC42.1
AT3G02010			Pentatricopeptide repeat (PPR)...		Potri.002G237100 [exp]	6.70	0.7324
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	10.39	0.7660	Pt-NAP57.2
AT3G15080			Polynucleotidyl transferase, r...		Potri.001G373500 [exp]	12.36	0.7258
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	12.96	0.7368
AT4G32610			copper ion binding (.1)		Potri.006G246300 [exp]	13.22	0.7054
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	14.31	0.7860

Compare expression of checked genes

Potri.015G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.