Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25360 671 / 0 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) AT5G51640 635 / 0 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G11090 254 / 7e-79 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G70230 254 / 7e-79 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G23790 253 / 2e-78 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT5G15890 246 / 1e-74 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT1G01430 238 / 4e-72 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15900 236 / 8e-72 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT4G01080 231 / 9e-70 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT3G28150 221 / 2e-66 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129700 [exp] 900 / 0 AT4G25360 640 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.004G105500 [exp] 265 / 6e-83 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 259 / 1e-80 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 249 / 6e-77 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.001G093800 [exp] 248 / 7e-76 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.002G168400 [exp] 246 / 2e-75 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.003G137800 [exp] 241 / 2e-73 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.014G095800 [exp] 240 / 3e-73 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 240 / 3e-73 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031695 [exp] 665 / 0 AT5G51640 613 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10031117 [exp] 660 / 0 AT5G51640 608 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10015026 [exp] 653 / 0 AT5G51640 624 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10038902 [exp] 639 / 0 AT5G51640 615 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10029454 [exp] 249 / 6e-77 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 247 / 7e-77 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10024167 [exp] 246 / 5e-76 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10003061 [exp] 246 / 1e-75 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10034087 [exp] 244 / 9e-75 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10032367 [exp] 243 / 8e-74 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.015G131600.7 pacid=42775003 polypeptide=Potri.015G131600.7.p locus=Potri.015G131600 ID=Potri.015G131600.7.v4.1 annot-version=v4.1 ATGGGGAAAGCCATGAACTTGGCTTCTTCACCAAAAGGGACTAATCCTGCTATGGCTGCGTTTCCACGGTCACTTTCTTCAATGGCAGCCTCAGTGGGAG GCCTTGCATTATTCTTGGTTATTGCTTCTTTGCTTTTGGTTTCATACCCTATAGGTTCCACTGTTCGTGGATACTTTTATGGGATAGATAGCTCCAGACA AGTGGATTTACTCATTTTTGAAGGCAATCAGAGCTCGATTGATCTGCACCATGATAGTAATTTAGATGTGGTTGATGAGGATTCTTCACTCGGGTTAGAT TTAAAAGGGCCCATTAGTTTAGGTGGTGTTAATAATAACAGTGTAAATGTCATTGATAGTCAATCTGAGTTTAATTTACAAGAATCCACTACTGGTACAA GAAAAGAAGGGCAGACCAACCCTAAGGGTGGTTCAGTTACTTTAAGTGTCAAAGAAATTGATGCAGATAAAGGATCAGAAGAGAATAGCACAGATGCTGC TTCTGCAGATTCTAAATCAGGGGCCAAGTCAGATATATCTGCTGTGCCCAGTAATGCATCCAAAACTGGTTCAGATGATTCAGGCTGTGATTTGTACCAA GGAAGTTGGTTTTACGATTCACTGGGACCATTATACACAAACAACACATGCCCTGTCCTGACACAGATGCAGAATTGCCAGGGAAATGGAAGGCCTGACA AGGAATATGAGAATTGGCGGTGGAAACCTTCCCAGTGTGACCTCCCACGATTCGATGCCAAGAAGTTTCTGGAATTGATGAGAGGGAAAACAATAGCTTT CATTGGTGACTCTGTTGCTCGAAACCAGATGGAATCGATGTTGTGCCTTCTCTGGCAGGTAGAAGCTCCTAAAAACCGAGGGAACAAAAAAATGCAACGA TATTTCTTTAGGTCAACATCTACCATGGTTGTCCGAATATGGTCCTCTTGGCTTGTTCACCAAACATCAGAATCTATTGACTTCGCTCCAAAGGGTGTTG TCAAACTCCACCTTGATGCCCCGGATGAGCATTTCATGGAATTCATCCCAAATTTTGATGTGATTGTTCTCTCTTCTGGACACTGGTTTGCCAAGCAGTC AGTCTATGTCCTCAACAATGAAATTGTAGGGGGACAGTTGTGGTGGCCAGACAGATCTCGTCCAATGAAGATTAACAACGTTGAAGCATTTGGGATATCT GTTGAGACAATTCTCACATCCATTGCCACACATCCAAATTTTACTGGGCTAACTATTCTCCGCACATATTCACCTGACCATTACGAGGGCGGGGCATGGA ATACTGGTGGATCATGCACTGGGAAGGAAAAGCCTCTTGCACCAGGTGAATTAGTGGAAAATGGCTTTACTGAAATAATGCATAAGAAACAGATAACAGG TTTTGATCGAGCAATTAATAAGGCGACCAATAAATCAAAGTTGAAGCTGATGGATATCACTGAATCCTTCGGCTATCGCCATGATGGACATCCAGGTCCA TACCGAAGCCCTGACCCTAATAAACTCACAAAACGCGGTCCACATGGAAAGCCACCACCGCAGGATTGCTTGCACTGGTGCATGCCTGGCCCAGTTGATA CCTGGAATGAACTTGTGCTTGAAATCATTAGAAGAGATTTTGAAGCCAACCAAGACCCTTCAATATGA
AA sequence Show only first row Show all	>Potri.015G131600.7 pacid=42775003 polypeptide=Potri.015G131600.7.p locus=Potri.015G131600 ID=Potri.015G131600.7.v4.1 annot-version=v4.1 MGKAMNLASSPKGTNPAMAAFPRSLSSMAASVGGLALFLVIASLLLVSYPIGSTVRGYFYGIDSSRQVDLLIFEGNQSSIDLHHDSNLDVVDEDSSLGLD LKGPISLGGVNNNSVNVIDSQSEFNLQESTTGTRKEGQTNPKGGSVTLSVKEIDADKGSEENSTDAASADSKSGAKSDISAVPSNASKTGSDDSGCDLYQ GSWFYDSLGPLYTNNTCPVLTQMQNCQGNGRPDKEYENWRWKPSQCDLPRFDAKKFLELMRGKTIAFIGDSVARNQMESMLCLLWQVEAPKNRGNKKMQR YFFRSTSTMVVRIWSSWLVHQTSESIDFAPKGVVKLHLDAPDEHFMEFIPNFDVIVLSSGHWFAKQSVYVLNNEIVGGQLWWPDRSRPMKINNVEAFGIS VETILTSIATHPNFTGLTILRTYSPDHYEGGAWNTGGSCTGKEKPLAPGELVENGFTEIMHKKQITGFDRAINKATNKSKLKLMDITESFGYRHDGHPGP YRSPDPNKLTKRGPHGKPPPQDCLHWCMPGPVDTWNELVLEIIRRDFEANQDPSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25360		TBL18	TRICHOME BIREFRINGENCE-LIKE 18...		Potri.015G131600 [exp]	0	1
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	7.87	0.8757
AT2G19710			Regulator of Vps4 activity in ...		Potri.006G149800 [exp]	8.48	0.8592
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	8.54	0.8826	LOX3.1
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.014G017300 [exp]	10.81	0.8665	SCOF.2
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	14.96	0.8491
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	15.68	0.8647
AT2G46080			unknown protein		Potri.008G085600 [exp]	16.12	0.8565
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.008G117300 [exp]	16.49	0.8660
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.002G119300 [exp]	18.43	0.8654
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.005G036800 [exp]	21.16	0.8620

Compare expression of checked genes

Potri.015G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.